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UBA-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   RuvA C-terminal domain-like [ 46928] (9)
Superfamily:   UBA-like [ 46934] (4)
Families:   UBA domain [ 46935] (24)
  TS-N domain [ 63423]
  TAP-C domain-like [ 68973] (2)
  CUE domain [ 88995] (4)

Superfamily statistics
Genomes (3,215) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 19,529 0 45
Proteins 17,938 0 44

Functional annotation
General category General
Detailed category Protein interaction

Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.000000005998Least InformativeDirect
Enzyme Commission (EC)Ligases0.5691Least InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides0.8024Least InformativeInherited
Enzyme Commission (EC)Omega peptidases0Moderately InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0.0000001025Moderately InformativeDirect
Enzyme Commission (EC)Acting on acid anhydrides; involved in cellular an0.0003685Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds0.02125Moderately InformativeInherited
Enzyme Commission (EC)Acid--D-amino-acid ligases (peptide synthases)0.0001583InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details) Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.06878Least InformativeInherited
Worm Phenotype (WP)cell development variant0.3308Least InformativeInherited
Worm Phenotype (WP)protein protein interaction variant0.0006081Moderately InformativeDirect
Worm Phenotype (WP)neuron migration variant0.00009023InformativeDirect

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)organism subdivision0.7531Least InformativeInherited
Zebrafish Anatomy (ZA)compound organ0.8579Least InformativeInherited
Zebrafish Anatomy (ZA)head0.4714Moderately InformativeInherited
Zebrafish Anatomy (ZA)anatomical cluster0.636Moderately InformativeInherited
Zebrafish Anatomy (ZA)skeletal element0.08301InformativeInherited
Zebrafish Anatomy (ZA)cranium0.1407InformativeInherited
Zebrafish Anatomy (ZA)ethmoid cartilage0.0009473Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.00000004836Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorus-containing groups0.8022Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.0000000001642Moderately InformativeDirect
Enzyme Commission (EC)Acyltransferases0.00000008717Moderately InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0.000002322Moderately InformativeDirect
Enzyme Commission (EC)Carbon-oxygen lyases0.4145Moderately InformativeInherited
Enzyme Commission (EC)Acting on acid anhydrides0.5349Moderately InformativeInherited
Enzyme Commission (EC)Omega peptidases0InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase0.0000001586InformativeDirect
Enzyme Commission (EC)HECT-type E3 ubiquitin transferase0.0001177Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport1Least InformativeInherited
Biological processUbl conjugation pathway0Moderately InformativeDirect
Biological processProtein transport0.000000000000214Moderately InformativeDirect
Biological processDifferentiation0.4121Moderately InformativeInherited
Biological processAutophagy0InformativeDirect
Biological processProtein biosynthesis0InformativeDirect
Biological processInflammatory response0.0000002735InformativeDirect
Biological processmRNA transport0.000000001732Highly InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentLipid droplet0.000009164Highly InformativeDirect
Cellular componentProteasome0.0001502Highly InformativeDirect
DomainLeucine-rich repeat0.0005501InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationProtease0.003513Moderately InformativeInherited
Post-translational modificationThiol protease0.0000001813InformativeDirect
Post-translational modificationElongation factor0Highly InformativeDirect
Post-translational modificationAspartyl protease0.00000000000004301Highly InformativeDirect
Post-translational modificationPhosphoprotein0.000006702Least InformativeDirect
Post-translational modificationUbl conjugation0.000000938Moderately InformativeDirect
Post-translational modificationIsopeptide bond0.000001301Moderately InformativeDirect
Post-translational modificationNitration0.00004329InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR009060 SSF46934 Protein matches

UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [PubMed12079361]. HHR23A, the human homologue of yeast Rad23A is a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The fold of the UBA domain consists of a compact three-helical bundle with a right-handed twist, and have a conserved hydrophobic surface patch for protein-protein interactions. UBA-like domains can be found in other proteins as well, such as the TS-N domain in the elongation factor Ts (EF-Ts), which catalyses the recycling of the GTPase EF-Tu required for the binding of aminoacyl-tRNA top the ribosomal A site [PubMed11744709]; and the C-terminal domain of TAP/NXF1, which functions in nuclear export through the interaction of its UBA-like domain with FG nucleoporins [PubMed12581645].

InterPro database

PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 39 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a UBA-like domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 39 hidden Markov models representing the UBA-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]