SUPERFAMILY 1.75 HMM library and genome assignments server

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Second domain of FERM superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Acyl-CoA binding protein-like [ 47026] (2)
Superfamily:   Second domain of FERM [ 47031]
Families:   Second domain of FERM [ 47032] (8)


Superfamily statistics
Genomes (246) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 6,940 21,193 21
Proteins 6,495 19,912 21


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0.00000002725Least InformativeDirect
Enzyme Commission (EC)Phosphoric monoester hydrolases0.000000000000007826Moderately InformativeDirect
Enzyme Commission (EC)Protein-tyrosine-phosphatase0InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase0InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.9548Least InformativeInherited
Disease Ontology (DO)nervous system cancer0.04982Moderately InformativeInherited
Disease Ontology (DO)meningioma0.0001518InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.312Least InformativeInherited
Mammalian Phenotype (MP)hearing/vestibular/ear phenotype0.07345Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal somatic nervous system morphology0.3979Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cochlear hair cell morphology0.03103InformativeInherited
Mammalian Phenotype (MP)abnormal voluntary movement0.8981InformativeInherited
Mammalian Phenotype (MP)abnormal cochlear hair cell stereociliary bundle morphology0.004694Highly InformativeInherited
Mammalian Phenotype (MP)abnormal head movements0.006924Highly InformativeInherited
Mammalian Phenotype (MP)abnormal cochlear inner hair cell morphology0.01087Highly InformativeInherited
Mammalian Phenotype (MP)stereotypic behavior0.06083Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell morphology variant0.04387Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.0673Least InformativeInherited
Worm Phenotype (WP)organ system morphology variant0.1504Least InformativeInherited
Worm Phenotype (WP)cell development variant0.2074Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.6684Least InformativeInherited
Worm Phenotype (WP)protein expression variant0.00442Moderately InformativeInherited
Worm Phenotype (WP)cell component morphology variant0.2164Moderately InformativeInherited
Worm Phenotype (WP)muscle cell physiology variant0.0000009535InformativeDirect
Worm Phenotype (WP)mitochondria morphology variant0.00002347InformativeDirect
Worm Phenotype (WP)level of protein expression variant0.00004884InformativeDirect
Worm Phenotype (WP)body wall muscle sarcomere morphology variant0.0000545InformativeDirect
Worm Phenotype (WP)cell component localization variant0.0001129InformativeDirect
Worm Phenotype (WP)mitochondria alignment variant0.000000287Highly InformativeDirect
Worm Phenotype (WP)protein expression reduced0.00001091Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)organ system subdivision0Least InformativeDirect
Fly Anatomy (FA)adult0.01772Least InformativeInherited
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)head0.0512Moderately InformativeInherited
Fly Anatomy (FA)sensory system0.0599Moderately InformativeInherited
Fly Anatomy (FA)region of integument0.2107Moderately InformativeInherited
Fly Anatomy (FA)adult integumentary system0.4711Moderately InformativeInherited
Fly Anatomy (FA)adult external head0.06115InformativeInherited
Fly Anatomy (FA)eo-type sensillum0.3075InformativeInherited
Fly Anatomy (FA)head bristle0.0002035Highly InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0.1836Least InformativeInherited
Xenopus ANatomical entity (XAN)anatomical system1Least InformativeInherited
Xenopus ANatomical entity (XAN)sensory system0.2856Moderately InformativeInherited
Xenopus ANatomical entity (XAN)peripheral nervous system0.0004619InformativeDirect
Xenopus ANatomical entity (XAN)gustatory system0.0002199Highly InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorus-containing groups0.00001152Least InformativeDirect
Enzyme Commission (EC)Hydrolases0.03281Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases0.0000000000000561Moderately InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0.000008252Moderately InformativeDirect
Enzyme Commission (EC)Protein-tyrosine kinases0InformativeDirect
Enzyme Commission (EC)Protein-tyrosine-phosphatase0InformativeDirect
Enzyme Commission (EC)RING-type E3 ubiquitin transferase0.0000002942InformativeDirect
Enzyme Commission (EC)Non-specific protein-tyrosine kinase0Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 10 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Second domain of FERM domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 10 hidden Markov models representing the Second domain of FERM superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]