SUPERFAMILY 1.75 HMM library and genome assignments server


FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Four-helical up-and-down bundle [ 47161] (28)
Superfamily:   FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) [ 47212]
Families:   FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) [ 47213]


Superfamily statistics
Genomes (440) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 593 728 3
Proteins 591 726 3


Functional annotation
General category General
Detailed category Small molecule binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of cellular process 0.00006097 Least Informative Direct
Biological Process (BP) response to stimulus 0.0001278 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.0003528 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.009489 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.05242 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.1274 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.09173 Least Informative Inherited
Biological Process (BP) cellular protein modification process 0.00005011 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.000000006021 Moderately Informative Direct
Biological Process (BP) negative regulation of metabolic process 0.0001399 Moderately Informative Direct
Biological Process (BP) signal transduction 0.009196 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.03799 Moderately Informative Inherited
Biological Process (BP) regulation of cellular catabolic process 0.0000003927 Informative Direct
Biological Process (BP) response to nutrient levels 0.00000004459 Informative Direct
Biological Process (BP) intracellular signal transduction 0.000000004953 Informative Direct
Biological Process (BP) phosphorylation 0.01637 Informative Inherited
Biological Process (BP) protein phosphorylation 0.0003605 Highly Informative Direct
Biological Process (BP) regulation of autophagy 0 Highly Informative Direct
Biological Process (BP) negative regulation of cellular catabolic process 0 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.00000000001014 Moderately Informative Direct
Molecular Function (MF) kinase activity 0.000000000001632 Informative Direct
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.0000000000004899 Informative Direct
Cellular Component (CC) protein complex 0.00002109 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0945 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.01638 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.03708 Least Informative Inherited
Cellular Component (CC) membrane 0.1897 Least Informative Inherited
Cellular Component (CC) organelle membrane 0.0003144 Moderately Informative Direct
Cellular Component (CC) lytic vacuole 0.00000000003328 Informative Direct
Cellular Component (CC) vacuolar part 0.0000006588 Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Protein-serine/threonine kinases0.00000007787Moderately InformativeDirect

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0.00000007207Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase2.419e-16InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell cycle0.000000005605Moderately InformativeDirect
Cellular componentNucleus0.0001967Least InformativeDirect
DomainRepeat0Least InformativeDirect
DomainTPR repeat0.000000003599Highly InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionATP-binding0Moderately InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationKinase0Moderately InformativeDirect
Post-translational modificationSerine/threonine-protein kinase0.00001458InformativeDirect
Post-translational modificationPhosphoprotein0.0002311Least InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR009076 SSF47212 Protein matches
Abstract

Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest [PubMed10089303]. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer [PubMed8662507]. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist.

FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function [PubMed12231510]. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [PubMed11684675].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]