SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Ribosomal protein S7 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein S7 [ 47972]
Superfamily:   Ribosomal protein S7 [ 47973]
Families:   Ribosomal protein S7 [ 47974]


Superfamily statistics
Genomes (3,239) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,267 26,897 15
Proteins 4,261 26,871 15


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process0.00020140.00000000006272Least InformativeDirect
Biological Process (BP)cellular nitrogen compound metabolic process0.00013420.000000000604Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.00036930.0000005551Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.023970.3906Least InformativeInherited
Biological Process (BP)organonitrogen compound metabolic process0.0021710.000000165Least InformativeInherited
Biological Process (BP)primary metabolic process0.023090.00009367Least InformativeInherited
Biological Process (BP)peptide metabolic process0.0000000000046490Moderately InformativeDirect
Biological Process (BP)gene expression0.0000000068140Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.0000000018140Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process0.000000000020460Moderately InformativeDirect
Biological Process (BP)ribosome biogenesis0.00000013860.000002092InformativeDirect
Biological Process (BP)mitochondrial gene expression0.00091970.0000000003297Highly InformativeDirect
Molecular Function (MF)structural molecule activity00Moderately InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.00000088810.0000000001159Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.00000000013220.0000000000002483Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.008620.0001186Least InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle11Least InformativeInherited
Cellular Component (CC)ribosome0.00000000000015920Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.000000038670.0000000007703Moderately InformativeDirect
Cellular Component (CC)intracellular organelle lumen0.13580.0006908Moderately InformativeInherited
Cellular Component (CC)mitochondrial ribosome0.00000004670InformativeDirect
Cellular Component (CC)small ribosomal subunit00InformativeDirect
Cellular Component (CC)mitochondrial small ribosomal subunit0.0000000012220Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00000000006272 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.000000000604 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0000005551 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00009367 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.000000165 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.3906 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0 Moderately Informative Direct
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) ribosome biogenesis 0.000002092 Informative Direct
Biological Process (BP) mitochondrial gene expression 0.0000000003297 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.0000000001159 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.0000000000002483 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0001186 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.0000000007703 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.0006908 Moderately Informative Direct
Cellular Component (CC) mitochondrial ribosome 0 Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial small ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentPlastid0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationtRNA-binding0Highly InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000235 SSF47973 Protein matches
Abstract

Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [PubMed8338632, PubMed8524651]. The structure for S7 is known [PubMed9331418].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S7 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Ribosomal protein S7 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]