SUPERFAMILY 1.75 HMM library and genome assignments server


GTPase activation domain, GAP superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   GTPase activation domain, GAP [ 48349]
Superfamily:   GTPase activation domain, GAP [ 48350] (2)
Families:   BCR-homology GTPase activation domain (BH-domain) [ 48351] (5)
  p120GAP domain-like [ 48360] (2)


Superfamily statistics
Genomes (506) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 15,408 16,705 10
Proteins 15,253 16,608 10


Functional annotation
General category Regulation
Detailed category Signal transduction

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)regulation of cellular process0.00024527.435e-11Least InformativeDirect
Biological Process (BP)regulation of metabolic process0.25650.002294Least InformativeInherited
Biological Process (BP)single-organism cellular process0.091640Least InformativeInherited
Biological Process (BP)positive regulation of molecular function1.139e-050Moderately InformativeDirect
Biological Process (BP)regulation of catalytic activity6.009e-050Moderately InformativeDirect
Biological Process (BP)regulation of nucleobase-containing compound metabolic process0.00015024.478e-09Moderately InformativeDirect
Biological Process (BP)regulation of signal transduction0.051880Moderately InformativeInherited
Biological Process (BP)regulation of phosphate metabolic process10Moderately InformativeInherited
Biological Process (BP)regulation of nucleoside metabolic process4.193e-080InformativeDirect
Biological Process (BP)regulation of purine nucleotide metabolic process1.392e-070InformativeDirect
Biological Process (BP)positive regulation of hydrolase activity2.088e-070InformativeDirect
Biological Process (BP)regulation of cellular catabolic process5.491e-070InformativeDirect
Biological Process (BP)locomotion6.457e-050InformativeDirect
Biological Process (BP)cellular component movement0.00035455.489e-11InformativeDirect
Biological Process (BP)regulation of Rho GTPase activity1.204e-111.24e-10Highly InformativeDirect
Biological Process (BP)positive regulation of Ras GTPase activity1.215e-108.119e-09Highly InformativeDirect
Molecular Function (MF)enzyme regulator activity4.533e-060Moderately InformativeDirect
Molecular Function (MF)GTPase regulator activity4.123e-090InformativeDirect
Molecular Function (MF)enzyme activator activity0.015070InformativeInherited
Molecular Function (MF)small GTPase regulator activity5.691e-111.217e-07Highly InformativeDirect
Molecular Function (MF)GTPase activator activity0.0015410Highly InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) regulation of cellular process 7.435e-11 Least Informative Direct
Biological Process (BP) developmental process 0 Least Informative Direct
Biological Process (BP) multicellular organismal process 2.184e-13 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0 Least Informative Direct
Biological Process (BP) regulation of metabolic process 0.002294 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) localization 0.001446 Least Informative Inherited
Biological Process (BP) positive regulation of molecular function 0 Moderately Informative Direct
Biological Process (BP) regulation of catalytic activity 0 Moderately Informative Direct
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 4.478e-09 Moderately Informative Direct
Biological Process (BP) single-organism developmental process 4.217e-07 Moderately Informative Direct
Biological Process (BP) regulation of signal transduction 0 Moderately Informative Direct
Biological Process (BP) signal transduction 0 Moderately Informative Direct
Biological Process (BP) regulation of phosphate metabolic process 0 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 7.337e-14 Moderately Informative Direct
Biological Process (BP) regulation of cellular component organization 9.595e-10 Moderately Informative Direct
Biological Process (BP) nervous system development 1.251e-05 Moderately Informative Direct
Biological Process (BP) regulation of localization 0.0001565 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 1 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.02022 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 0.05474 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 0.9847 Moderately Informative Inherited
Biological Process (BP) system process 0.7334 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.4474 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) immune system process 1 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) lipid biosynthetic process 0.6294 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.8654 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 1 Moderately Informative Inherited
Biological Process (BP) cellular lipid metabolic process 0.08516 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) organophosphate metabolic process 0.1389 Moderately Informative Inherited
Biological Process (BP) regulation of nucleoside metabolic process 0 Informative Direct
Biological Process (BP) regulation of purine nucleotide metabolic process 0 Informative Direct
Biological Process (BP) positive regulation of hydrolase activity 0 Informative Direct
Biological Process (BP) regulation of cellular catabolic process 0 Informative Direct
Biological Process (BP) locomotion 0 Informative Direct
Biological Process (BP) cellular component movement 5.489e-11 Informative Direct
Biological Process (BP) cytoskeleton organization 0 Informative Direct
Biological Process (BP) actin filament-based process 0 Informative Direct
Biological Process (BP) intracellular signal transduction 0 Informative Direct
Biological Process (BP) regulation of cellular component movement 5.088e-14 Informative Direct
Biological Process (BP) regulation of locomotion 4.408e-12 Informative Direct
Biological Process (BP) regulation of cell development 1.07e-11 Informative Direct
Biological Process (BP) regulation of nervous system development 3.597e-10 Informative Direct
Biological Process (BP) cell projection organization 3.83e-10 Informative Direct
Biological Process (BP) glycerolipid metabolic process 2.073e-09 Informative Direct
Biological Process (BP) localization of cell 1.278e-08 Informative Direct
Biological Process (BP) phospholipid metabolic process 1.047e-07 Informative Direct
Biological Process (BP) regulation of anatomical structure morphogenesis 1.359e-07 Informative Direct
Biological Process (BP) regulation of cellular component biogenesis 2.989e-07 Informative Direct
Biological Process (BP) negative regulation of cellular component organization 1.224e-06 Informative Direct
Biological Process (BP) epithelium development 2.484e-05 Informative Direct
Biological Process (BP) cellular component morphogenesis 0.0001919 Informative Direct
Biological Process (BP) regulation of response to external stimulus 1 Informative Inherited
Biological Process (BP) regulation of intracellular transport 1 Informative Inherited
Biological Process (BP) regulation of establishment of protein localization 0.16 Informative Inherited
Biological Process (BP) organelle assembly 0.7835 Informative Inherited
Biological Process (BP) cell cycle process 0.3209 Informative Inherited
Biological Process (BP) mitotic cell cycle 0.1379 Informative Inherited
Biological Process (BP) regulation of intracellular protein kinase cascade 1 Informative Inherited
Biological Process (BP) negative regulation of developmental process 0.4495 Informative Inherited
Biological Process (BP) regulation of organelle organization 0.1062 Informative Inherited
Biological Process (BP) microtubule-based process 0.4626 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.301 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.5343 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.2592 Informative Inherited
Biological Process (BP) synaptic transmission 0.003361 Informative Inherited
Biological Process (BP) regulation of defense response 0.8766 Informative Inherited
Biological Process (BP) regulation of cell proliferation 1 Informative Inherited
Biological Process (BP) dephosphorylation 0.06266 Informative Inherited
Biological Process (BP) phosphorylation 0.9229 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 0.2125 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.05469 Informative Inherited
Biological Process (BP) regulation of lipid metabolic process 0.7421 Informative Inherited
Biological Process (BP) negative regulation of cell death 0.8469 Informative Inherited
Biological Process (BP) regulation of apoptotic process 0.003854 Informative Inherited
Biological Process (BP) negative regulation of transport 0.01943 Informative Inherited
Biological Process (BP) regulation of immune response 1 Informative Inherited
Biological Process (BP) regulation of secretion 1 Informative Inherited
Biological Process (BP) regulation of immune effector process 0.1979 Informative Inherited
Biological Process (BP) regulation of vesicle-mediated transport 0.2375 Informative Inherited
Biological Process (BP) growth 0.01859 Informative Inherited
Biological Process (BP) single-organism behavior 0.08558 Informative Inherited
Biological Process (BP) regulation of growth 0.8657 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 0.5478 Informative Inherited
Biological Process (BP) response to hormone stimulus 1 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.2293 Informative Inherited
Biological Process (BP) cellular response to endogenous stimulus 0.2305 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.6361 Informative Inherited
Biological Process (BP) response to organonitrogen compound 0.06543 Informative Inherited
Biological Process (BP) biological adhesion 0.001773 Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 0.05614 Informative Inherited
Biological Process (BP) positive regulation of phosphate metabolic process 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) generation of neurons 0.08374 Informative Inherited
Biological Process (BP) central nervous system development 0.01404 Informative Inherited
Biological Process (BP) tube development 0.0344 Informative Inherited
Biological Process (BP) embryonic morphogenesis 0.2028 Informative Inherited
Biological Process (BP) tissue morphogenesis 0.3326 Informative Inherited
Biological Process (BP) organ morphogenesis 0.008846 Informative Inherited
Biological Process (BP) enzyme linked receptor protein signaling pathway 0.1012 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.9891 Informative Inherited
Biological Process (BP) embryo development ending in birth or egg hatching 0.5642 Informative Inherited
Biological Process (BP) cardiovascular system development 0.3951 Informative Inherited
Biological Process (BP) regulation of Rho GTPase activity 1.24e-10 Highly Informative Direct
Biological Process (BP) positive regulation of Ras GTPase activity 8.119e-09 Highly Informative Direct
Biological Process (BP) small GTPase mediated signal transduction 0 Highly Informative Direct
Biological Process (BP) chemotaxis 3.741e-15 Highly Informative Direct
Biological Process (BP) phosphatidylinositol metabolic process 5.576e-15 Highly Informative Direct
Biological Process (BP) negative regulation of locomotion 2.607e-13 Highly Informative Direct
Biological Process (BP) negative regulation of cellular component movement 7.819e-12 Highly Informative Direct
Biological Process (BP) cell part morphogenesis 2.721e-09 Highly Informative Direct
Biological Process (BP) lipid modification 2.018e-08 Highly Informative Direct
Biological Process (BP) limb morphogenesis 2.158e-05 Highly Informative Direct
Biological Process (BP) regulation of neuron apoptotic process 4.535e-05 Highly Informative Direct
Biological Process (BP) neural tube development 5.477e-05 Highly Informative Direct
Biological Process (BP) cell junction organization 8.082e-05 Highly Informative Direct
Biological Process (BP) post-embryonic organ development 9.63e-05 Highly Informative Direct
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 0.0001118 Highly Informative Direct
Biological Process (BP) cell division 0.0001573 Highly Informative Direct
Biological Process (BP) regulation of cell adhesion 0.0001885 Highly Informative Direct
Biological Process (BP) learning or memory 0.000205 Highly Informative Direct
Biological Process (BP) regulation of striated muscle tissue development 0.0005443 Highly Informative Direct
Biological Process (BP) telencephalon development 0.0005506 Highly Informative Direct
Biological Process (BP) neural precursor cell proliferation 0.0006572 Highly Informative Direct
Biological Process (BP) negative regulation of neuron death 0.0006878 Highly Informative Direct
Biological Process (BP) regulation of cell morphogenesis involved in differentiation 0.002933 Highly Informative Inherited
Biological Process (BP) regulation of neuron projection development 0.02729 Highly Informative Inherited
Biological Process (BP) regulation of behavior 1 Highly Informative Inherited
Biological Process (BP) neuron projection development 0.00126 Highly Informative Inherited
Biological Process (BP) negative regulation of intracellular transport 0.02089 Highly Informative Inherited
Biological Process (BP) negative regulation of protein transport 0.6319 Highly Informative Inherited
Biological Process (BP) regulation of intracellular protein transport 0.6504 Highly Informative Inherited
Biological Process (BP) spindle organization 0.0738 Highly Informative Inherited
Biological Process (BP) mitosis 0.3491 Highly Informative Inherited
Biological Process (BP) renal system development 0.1369 Highly Informative Inherited
Biological Process (BP) epithelial cell development 0.5664 Highly Informative Inherited
Biological Process (BP) neuromuscular process 0.1012 Highly Informative Inherited
Biological Process (BP) negative regulation of response to external stimulus 0.2725 Highly Informative Inherited
Biological Process (BP) post-embryonic development 0.07337 Highly Informative Inherited
Biological Process (BP) cell morphogenesis involved in differentiation 0.003601 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.02771 Highly Informative Inherited
Biological Process (BP) leukocyte migration 0.005054 Highly Informative Inherited
Biological Process (BP) negative regulation of cell proliferation 0.6622 Highly Informative Inherited
Biological Process (BP) regulation of nucleocytoplasmic transport 0.0146 Highly Informative Inherited
Biological Process (BP) regulation of proteolysis 0.01566 Highly Informative Inherited
Biological Process (BP) circadian rhythm 0.0264 Highly Informative Inherited
Biological Process (BP) locomotory behavior 0.5764 Highly Informative Inherited
Biological Process (BP) negative regulation of apoptotic process 0.2128 Highly Informative Inherited
Biological Process (BP) negative regulation of immune system process 0.1615 Highly Informative Inherited
Biological Process (BP) negative regulation of cell activation 0.1037 Highly Informative Inherited
Biological Process (BP) regulation of exocytosis 0.03224 Highly Informative Inherited
Biological Process (BP) negative regulation of secretion 0.04248 Highly Informative Inherited
Biological Process (BP) regulation of protein localization to nucleus 0.2385 Highly Informative Inherited
Biological Process (BP) cell growth 0.004389 Highly Informative Inherited
Biological Process (BP) developmental growth 0.5846 Highly Informative Inherited
Biological Process (BP) positive regulation of growth 0.03707 Highly Informative Inherited
Biological Process (BP) regulation of multicellular organism growth 0.1769 Highly Informative Inherited
Biological Process (BP) response to peptide hormone stimulus 0.009321 Highly Informative Inherited
Biological Process (BP) cellular response to peptide 0.001615 Highly Informative Inherited
Biological Process (BP) cell adhesion 0.1866 Highly Informative Inherited
Biological Process (BP) regulation of actin cytoskeleton organization 0.507 Highly Informative Inherited
Biological Process (BP) regulation of protein complex assembly 0.1935 Highly Informative Inherited
Biological Process (BP) regulation of cyclic nucleotide metabolic process 1 Highly Informative Inherited
Biological Process (BP) establishment or maintenance of cell polarity 0.04633 Highly Informative Inherited
Biological Process (BP) morphogenesis of embryonic epithelium 0.002391 Highly Informative Inherited
Biological Process (BP) epithelial tube formation 0.0032 Highly Informative Inherited
Molecular Function (MF) binding 1.654e-05 Least Informative Direct
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) enzyme regulator activity 0 Moderately Informative Direct
Molecular Function (MF) anion binding 4.008e-05 Moderately Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.9301 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.4642 Moderately Informative Inherited
Molecular Function (MF) GTPase regulator activity 0 Informative Direct
Molecular Function (MF) enzyme activator activity 0 Informative Direct
Molecular Function (MF) enzyme binding 1.193e-09 Informative Direct
Molecular Function (MF) lipid binding 3.157e-06 Informative Direct
Molecular Function (MF) receptor activity 0.0005534 Informative Direct
Molecular Function (MF) phosphoric ester hydrolase activity 0.1334 Informative Inherited
Molecular Function (MF) kinase activity 1 Informative Inherited
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 1 Informative Inherited
Molecular Function (MF) receptor binding 0.4015 Informative Inherited
Molecular Function (MF) molecular transducer activity 0.001133 Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.3512 Informative Inherited
Molecular Function (MF) small GTPase regulator activity 1.217e-07 Highly Informative Direct
Molecular Function (MF) GTPase activator activity 0 Highly Informative Direct
Molecular Function (MF) Ras GTPase binding 0 Highly Informative Direct
Molecular Function (MF) protein domain specific binding 2.758e-06 Highly Informative Direct
Molecular Function (MF) phosphatidylinositol binding 0.2965 Highly Informative Inherited
Molecular Function (MF) protein complex binding 0.02935 Highly Informative Inherited
Cellular Component (CC) cytoplasmic part 7.627e-06 Least Informative Direct
Cellular Component (CC) membrane 0.0006278 Least Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.01153 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) cell projection 0 Moderately Informative Direct
Cellular Component (CC) cytosol 0 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 1.187e-14 Moderately Informative Direct
Cellular Component (CC) plasma membrane 0.00657 Moderately Informative Inherited
Cellular Component (CC) cell leading edge 0 Informative Direct
Cellular Component (CC) cell cortex 1.332e-14 Informative Direct
Cellular Component (CC) actin cytoskeleton 8.831e-09 Informative Direct
Cellular Component (CC) cell junction 1.775e-07 Informative Direct
Cellular Component (CC) neuron projection 0.2289 Informative Inherited
Cellular Component (CC) cell division site part 1.432e-10 Highly Informative Direct
Cellular Component (CC) growth cone 5.476e-06 Highly Informative Direct
Cellular Component (CC) receptor complex 0.02894 Highly Informative Inherited

Document: GO annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)immune system disease0.4745Least InformativeInherited
Disease Ontology (DO)hematopoietic system disease0.4368Moderately InformativeInherited
Disease Ontology (DO)polycythemia0.000464Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Mode of Inheritance (MI)Somatic mutation0.0003276Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0.5926Least InformativeInherited
Phenotypic Abnormality (PA)Behavioral abnormality0.3322InformativeInherited
Phenotypic Abnormality (PA)Abnormality of movement0.4115InformativeInherited
Phenotypic Abnormality (PA)Short attention span0.001186Highly InformativeInherited
Phenotypic Abnormality (PA)Hyperactivity0.005053Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)nervous system phenotype0.02645Least InformativeInherited
Mammalian Phenotype (MP)abnormal neuron morphology0.05458Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal brain morphology0.2098Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.5537Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.7435Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal somatic nervous system morphology0.7689Moderately InformativeInherited
Mammalian Phenotype (MP)ectopic neuron0.01774InformativeInherited
Mammalian Phenotype (MP)abnormal metencephalon morphology0.8979InformativeInherited
Mammalian Phenotype (MP)ectopic cerebellar granule cells2.154e-05Highly InformativeDirect
Mammalian Phenotype (MP)abnormal amacrine cell morphology0.0003468Highly InformativeDirect
Mammalian Phenotype (MP)abnormal ear development0.0009311Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glial cell physiology0.03469Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant0.1217Least InformativeInherited
Worm Phenotype (WP)early embryonic lethal0.03338Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.0817InformativeInherited
Worm Phenotype (WP)cleavage furrow defective early emb7.01e-05Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0.4086Least InformativeInherited
Zebrafish Anatomy (ZA)cavitated compound organ0.515Least InformativeInherited
Zebrafish Anatomy (ZA)central nervous system0.1249Moderately InformativeInherited

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0.002606Least InformativeInherited
Enzyme Commission (EC)Transferring phosphorous-containing groups0.0314Least InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases1.447e-09Moderately InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases1.182e-05Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase3.034e-06InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDifferentiation4.986e-07Moderately InformativeDirect
Biological processEndocytosis0InformativeDirect
Biological processNeurogenesis0InformativeDirect
Biological processAngiogenesis1.753e-12InformativeDirect
Cellular componentMembrane3.781e-13Least InformativeDirect
Cellular componentCytoplasm0.03951Least InformativeInherited
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell projection0Moderately InformativeDirect
Cellular componentCytoplasmic vesicle6.428e-16Moderately InformativeDirect
Cellular componentEndosome2.066e-10Moderately InformativeDirect
Cellular componentCytoskeleton5.292e-10Moderately InformativeDirect
Cellular componentGolgi apparatus1.691e-07Moderately InformativeDirect
Coding sequence diversityAlternative splicing1.238e-06Least InformativeDirect
DiseaseTumor suppressor1.088e-10Moderately InformativeDirect
DomainRepeat2.458e-06Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
DomainZinc-finger8.97e-07Moderately InformativeDirect
DomainSH2 domain0InformativeDirect
DomainSH3 domain0InformativeDirect
DomainSH3-binding6.286e-14InformativeDirect
DomainLIM domain3.079e-05Highly InformativeDirect
Molecular functionZinc1.021e-05Least InformativeDirect
Molecular functionCalmodulin-binding8.493e-09InformativeDirect
Molecular functionActin-binding0.0002049InformativeDirect
Post-translational modificationDevelopmental protein1.897e-11Moderately InformativeDirect
Post-translational modificationReceptor2.107e-05Moderately InformativeDirect
Post-translational modificationGTPase activation0InformativeDirect
Post-translational modificationGuanine-nucleotide releasing factor0InformativeDirect
Post-translational modificationMyosin1.281e-07Highly InformativeDirect
Post-translational modificationPhosphoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR008936 SSF48350 Protein matches
Abstract

Proteins containing a RhoGAP (Rho GTPase Activating Protein) domain usually function to catalyze the hydrolysis of GTP that is bound to Rho, Rac and/or Cdc42, inactivating these regulators of the actin cytoskeleton. The 53 known human RhoGAP domain-containing proteins are the largest known group of Rho GTPase regulators and significantly outnumber the 21 Rho GTPases they presumably regulate. This excess of GAP proteins probably indicates complex regulation of the Rho GTPases and is consistent with the existence of almost as many (48) human Dbl domain-containing Rho GEFs that act antagonistically to the RhoGAP proteins by activating the Rho GTPases. Phylogenetic analysis offers evidence for frequent domain duplication and for duplication of the entire genes containing these GAP domains [PubMed12297274].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a GTPase activation domain, GAP domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the GTPase activation domain, GAP superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


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