SUPERFAMILY 1.75 HMM library and genome assignments server

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Lipovitellin-phosvitin complex, superhelical domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   Lipovitellin-phosvitin complex, superhelical domain [ 48431]
Families:   Lipovitellin-phosvitin complex, superhelical domain [ 48432]


Superfamily statistics
Genomes (212) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 881 4,327 1
Proteins 879 4,297 1


Functional annotation
General category Metabolism
Detailed category Lipid metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.0002077Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.009755Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.06771Least InformativeInherited
Worm Phenotype (WP)life span variant0.000007896Moderately InformativeDirect
Worm Phenotype (WP)feeding behavior variant0.0004065Moderately InformativeDirect
Worm Phenotype (WP)organism pathogen response variant0.0000001046InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.00006183InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.001437InformativeInherited
Worm Phenotype (WP)pathogen susceptibility increased0.0000000001022Highly InformativeDirect
Worm Phenotype (WP)peptide uptake by intestinal cell variant0.000002063Highly InformativeDirect

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)compound organ0Least InformativeDirect
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)multi-tissue structure0Least InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Lipovitellin-phosvitin complex, superhelical domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Lipovitellin-phosvitin complex, superhelical domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]