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  Home > SCOP hierarchy > p53-like transcription factors superfamily


p53-like transcription factors superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Common fold of diphtheria toxin/transcription factors/cytochrome f [ 49379] (10)
Superfamily:   p53-like transcription factors [ 49417] (7)
Families:   p53 DNA-binding domain-like [ 81314] (2)
  Rel/Dorsal transcription factors, DNA-binding domain [ 81315] (6)
  T-box [ 81316] (2)
  STAT DNA-binding domain [ 81317] (3)
  RUNT domain [ 81318]
  DNA-binding domain from NDT80 [ 81992]
  DNA-binding protein LAG-1 (CSL) [ 110080]

 Superfamily statistics
Genomes (367) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 6,320 19,251 53
Proteins 6,210 18,948 53

 Functional annotation
General category Regulation
Detailed category DNA-binding

Document: Function annotation of SCOP domain superfamilies

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.1037Least InformativeInherited
Disease Ontology (DO)hematologic cancer0.00143Moderately InformativeInherited
Disease Ontology (DO)disease by infectious agent0.00476Moderately InformativeInherited
Disease Ontology (DO)gastrointestinal system disease0.01038Moderately InformativeInherited
Disease Ontology (DO)benign neoplasm0.02442Moderately InformativeInherited
Disease Ontology (DO)head and neck carcinoma0.0000002741InformativeDirect
Disease Ontology (DO)inflammatory bowel disease0.000002613InformativeDirect
Disease Ontology (DO)connective tissue cancer0.0000925InformativeDirect
Disease Ontology (DO)physical disorder0.001181InformativeInherited
Disease Ontology (DO)lymphoma0.007253InformativeInherited
Disease Ontology (DO)breast cancer0.008725InformativeInherited
Disease Ontology (DO)cell type benign neoplasm0.01084InformativeInherited
Disease Ontology (DO)respiratory system cancer0.1013InformativeInherited
Disease Ontology (DO)viral infectious disease0.2662InformativeInherited
Disease Ontology (DO)colitis0.00000008629Highly InformativeDirect
Disease Ontology (DO)Burkitt lymphoma0.00002689Highly InformativeDirect
Disease Ontology (DO)mumps0.00006567Highly InformativeDirect
Disease Ontology (DO)Barrett's esophagus0.00007215Highly InformativeDirect
Disease Ontology (DO)gastritis0.0002477Highly InformativeDirect
Disease Ontology (DO)chronic leukemia0.0003982Highly InformativeDirect
Disease Ontology (DO)pertussis0.0004111Highly InformativeDirect
Disease Ontology (DO)progressive multifocal leukoencephalopathy0.0005128Highly InformativeDirect
Disease Ontology (DO)laryngeal carcinoma0.0005345Highly InformativeDirect
Disease Ontology (DO)hemangioma0.0005531Highly InformativeDirect
Disease Ontology (DO)salivary gland adenoid cystic carcinoma0.0007319Highly InformativeDirect
Disease Ontology (DO)large intestine cancer0.007557Highly InformativeInherited

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.06523Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the head0.2049Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of limbs0.3253Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of limb bone morphology0.06707Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the upper limb0.139Moderately InformativeInherited
Phenotypic Abnormality (PA)Neoplasm0.1556Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of blood and blood-forming tissues0.2158Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the thorax0.2913Moderately InformativeInherited
Phenotypic Abnormality (PA)Aplasia/hypoplasia of the extremities0.01386InformativeInherited
Phenotypic Abnormality (PA)Lymphoma0.0004145Highly InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia involving bones of the thorax0.005544Highly InformativeInherited
Phenotypic Abnormality (PA)Aplasia/hypoplasia involving bones of the hand0.2071Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)growth/size/body region phenotype0.00000162Least InformativeDirect
Mammalian Phenotype (MP)mortality/aging0.000002055Least InformativeDirect
Mammalian Phenotype (MP)cellular phenotype0.0002033Least InformativeDirect
Mammalian Phenotype (MP)cardiovascular system phenotype0.0003418Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0.00612Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.007576Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.02697Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.1981Least InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology/development0.000000009933Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal leukocyte physiology0.0000005021Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal skeleton morphology0.0000008304Moderately InformativeDirect
Mammalian Phenotype (MP)integument phenotype0.000001217Moderately InformativeDirect
Mammalian Phenotype (MP)embryo phenotype0.000001872Moderately InformativeDirect
Mammalian Phenotype (MP)respiratory system phenotype0.000005443Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal craniofacial morphology0.000009455Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal gland morphology0.000009619Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal mononuclear cell morphology0.00002867Moderately InformativeDirect
Mammalian Phenotype (MP)limbs/digits/tail phenotype0.00005785Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal blood cell morphology0.00008696Moderately InformativeDirect
Mammalian Phenotype (MP)liver/biliary system phenotype0.0008506Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal inflammatory response0.001447Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune serum protein physiology0.0036Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.005898Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.01523Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal immune system organ morphology0.02007Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.03061Moderately InformativeInherited
Mammalian Phenotype (MP)neoplasm0.03177Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood vessel morphology0.03401Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal myeloid cell morphology0.04821Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heart morphology0.05446Moderately InformativeInherited
Mammalian Phenotype (MP)lethality during fetal growth through weaning0.05843Moderately InformativeInherited
Mammalian Phenotype (MP)prenatal lethality0.083Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal digestive system morphology0.1005Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal protein level0.1332Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell physiology0.4832Moderately InformativeInherited
Mammalian Phenotype (MP)altered susceptibility to infection0.5429Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hormone level0.7241Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal behavior1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin level0.00000001077InformativeDirect
Mammalian Phenotype (MP)increased susceptibility to infection0.000000309InformativeDirect
Mammalian Phenotype (MP)abnormal liver physiology0.000003212InformativeDirect
Mammalian Phenotype (MP)abnormal thymus morphology0.0000135InformativeDirect
Mammalian Phenotype (MP)abnormal coat appearance0.00001992InformativeDirect
Mammalian Phenotype (MP)abnormal T cell differentiation0.00003041InformativeDirect
Mammalian Phenotype (MP)abnormal fluid regulation0.0000472InformativeDirect
Mammalian Phenotype (MP)normal phenotype0.0000678InformativeDirect
Mammalian Phenotype (MP)abnormal B cell proliferation0.0001196InformativeDirect
Mammalian Phenotype (MP)hemorrhage0.000136InformativeDirect
Mammalian Phenotype (MP)altered tumor pathology0.0003106InformativeDirect
Mammalian Phenotype (MP)increased leukocyte cell number0.0004407InformativeDirect
Mammalian Phenotype (MP)abnormal cartilage morphology0.002051InformativeInherited
Mammalian Phenotype (MP)abnormal humoral immune response0.003873InformativeInherited
Mammalian Phenotype (MP)abnormal adaptive thermogenesis0.004061InformativeInherited
Mammalian Phenotype (MP)abnormal spinal cord morphology0.008848InformativeInherited
Mammalian Phenotype (MP)abnormal epidermal layer morphology0.0102InformativeInherited
Mammalian Phenotype (MP)abnormal circulating cytokine level0.01192InformativeInherited
Mammalian Phenotype (MP)abnormal gland physiology0.0227InformativeInherited
Mammalian Phenotype (MP)abnormal B lymphocyte antigen presentation0.02866InformativeInherited
Mammalian Phenotype (MP)abnormal lymph node morphology0.04134InformativeInherited
Mammalian Phenotype (MP)abnormal head morphology0.04169InformativeInherited
Mammalian Phenotype (MP)abnormal interferon level0.07154InformativeInherited
Mammalian Phenotype (MP)abnormal mammary gland morphology0.07609InformativeInherited
Mammalian Phenotype (MP)abnormal appendicular skeleton morphology0.08007InformativeInherited
Mammalian Phenotype (MP)abnormal thoracic cage morphology0.2403InformativeInherited
Mammalian Phenotype (MP)abnormal natural killer cell mediated cytotoxicity0.2424InformativeInherited
Mammalian Phenotype (MP)abnormal stomach morphology0.3271InformativeInherited
Mammalian Phenotype (MP)increased hemolymphoid system tumor incidence0.3509InformativeInherited
Mammalian Phenotype (MP)increased carcinoma incidence0.3809InformativeInherited
Mammalian Phenotype (MP)abnormal voluntary movement0.4845InformativeInherited
Mammalian Phenotype (MP)abnormal erythroid lineage cell morphology0.5392InformativeInherited
Mammalian Phenotype (MP)abnormal vertebrae morphology0.6966InformativeInherited
Mammalian Phenotype (MP)abnormal Peyer's patch morphology0.8937InformativeInherited
Mammalian Phenotype (MP)decreased B cell proliferation0.000006247Highly InformativeDirect
Mammalian Phenotype (MP)abnormal mammary gland epithelium physiology0.000009144Highly InformativeDirect
Mammalian Phenotype (MP)respiratory system inflammation0.000009672Highly InformativeDirect
Mammalian Phenotype (MP)lethality throughout fetal growth and development, complete penetrance0.00002656Highly InformativeDirect
Mammalian Phenotype (MP)abnormal secondary palate development0.00006093Highly InformativeDirect
Mammalian Phenotype (MP)abnormal intervertebral disk morphology0.0001113Highly InformativeDirect
Mammalian Phenotype (MP)impaired adaptive thermogenesis0.0001291Highly InformativeDirect
Mammalian Phenotype (MP)decreased dendritic cell number0.0001311Highly InformativeDirect
Mammalian Phenotype (MP)abnormal cervical atlas morphology0.0001411Highly InformativeDirect
Mammalian Phenotype (MP)abnormal stomach epithelium morphology0.0001707Highly InformativeDirect
Mammalian Phenotype (MP)cleft palate0.0002128Highly InformativeDirect
Mammalian Phenotype (MP)abnormal level of surface class II molecules0.0002749Highly InformativeDirect
Mammalian Phenotype (MP)abnormal thymus medulla morphology0.0003091Highly InformativeDirect
Mammalian Phenotype (MP)abnormal heart development0.0003209Highly InformativeDirect
Mammalian Phenotype (MP)abnormal circulating insulin-like growth factor I level0.0005456Highly InformativeDirect
Mammalian Phenotype (MP)increased adenocarcinoma incidence0.0006227Highly InformativeDirect
Mammalian Phenotype (MP)abnormal granulocyte number0.0006578Highly InformativeDirect
Mammalian Phenotype (MP)abnormal vertebral arch morphology0.0008303Highly InformativeDirect
Mammalian Phenotype (MP)abnormal mammary gland alveolus morphology0.0008645Highly InformativeDirect
Mammalian Phenotype (MP)abnormal spinal cord white matter morphology0.008992Highly InformativeInherited
Mammalian Phenotype (MP)abnormal IgG2a level0.01024Highly InformativeInherited
Mammalian Phenotype (MP)abnormal head movements0.01287Highly InformativeInherited
Mammalian Phenotype (MP)increased leukemia incidence0.01364Highly InformativeInherited
Mammalian Phenotype (MP)abnormal bone marrow cell morphology/development0.01871Highly InformativeInherited
Mammalian Phenotype (MP)embryonic lethality during organogenesis0.0602Highly InformativeInherited
Mammalian Phenotype (MP)abnormal Peyer's patch size0.1245Highly InformativeInherited
Mammalian Phenotype (MP)abnormal peripheral lymph node morphology0.1484Highly InformativeInherited
Mammalian Phenotype (MP)abnormal epidermis stratum spinosum morphology0.219Highly InformativeInherited
Mammalian Phenotype (MP)abnormal neurocranium morphology0.264Highly InformativeInherited
Mammalian Phenotype (MP)increased IgG level0.3557Highly InformativeInherited
Mammalian Phenotype (MP)abnormal sternum morphology0.8445Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organ system morphology variant0.01778Least InformativeInherited
Worm Phenotype (WP)cell development variant0.04306Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.0551Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.2032Least InformativeInherited
Worm Phenotype (WP)level of transgene expression variant0.0007794Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.04386Moderately InformativeInherited
Worm Phenotype (WP)pattern of transgene expression variant1Moderately InformativeInherited
Worm Phenotype (WP)lineage variant0.0004767Highly InformativeDirect
Worm Phenotype (WP)alimentary system morphology variant0.0005719Highly InformativeDirect
Worm Phenotype (WP)ectopic expression transgene0.0006106Highly InformativeDirect
Worm Phenotype (WP)gene expression level reduced0.0007344Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)cell number defective0.01601InformativeInherited
Fly Phenotype (FP)increased cell number0.0004811Highly InformativeDirect
Fly Phenotype (FP)cell size defective0.02211Highly InformativeInherited

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)adult0.002418Least InformativeInherited
Fly Anatomy (FA)organ system subdivision0.01023Least InformativeInherited
Fly Anatomy (FA)anatomical group0.02571Least InformativeInherited
Fly Anatomy (FA)somatic cell0.03732Least InformativeInherited
Fly Anatomy (FA)larva0.1048Least InformativeInherited
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)sense organ0.01247Moderately InformativeInherited
Fly Anatomy (FA)adult segment0.02418Moderately InformativeInherited
Fly Anatomy (FA)adult integumentary system0.03108Moderately InformativeInherited
Fly Anatomy (FA)adult thorax0.03399Moderately InformativeInherited
Fly Anatomy (FA)late embryo0.05987Moderately InformativeInherited
Fly Anatomy (FA)thoracic segment0.1121Moderately InformativeInherited
Fly Anatomy (FA)tagmatic subdivision of integument0.54Moderately InformativeInherited
Fly Anatomy (FA)embryonic/larval circulatory system0.0002345InformativeDirect
Fly Anatomy (FA)mechanosensory system0.0002435InformativeDirect
Fly Anatomy (FA)hemocyte0.01786InformativeInherited
Fly Anatomy (FA)head mesoderm derived embryonic hemocyte0.0001628Highly InformativeDirect
Fly Anatomy (FA)mesothoracic tergum0.000455Highly InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)compound organ0.5475Least InformativeInherited
Zebrafish Anatomy (ZA)cardiovascular system0.03914Moderately InformativeInherited
Zebrafish Anatomy (ZA)portion of tissue0.06378Moderately InformativeInherited
Zebrafish Anatomy (ZA)anatomical cluster0.3481Moderately InformativeInherited
Zebrafish Anatomy (ZA)pericardial region0.2309InformativeInherited
Zebrafish Anatomy (ZA)mesenchyme0.00004159Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0.113Least InformativeInherited
Xenopus ANatomical entity (XAN)embryo0.2255Least InformativeInherited
Xenopus ANatomical entity (XAN)head0.5644Least InformativeInherited
Xenopus ANatomical entity (XAN)nervous system0.6328Least InformativeInherited
Xenopus ANatomical entity (XAN)cavitated compound organ0.9314Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk1Least InformativeInherited
Xenopus ANatomical entity (XAN)multi-tissue structure0.000005574Moderately InformativeDirect
Xenopus ANatomical entity (XAN)sensory system0.0002575Moderately InformativeDirect
Xenopus ANatomical entity (XAN)embryonic structure0.00446Moderately InformativeInherited
Xenopus ANatomical entity (XAN)musculoskeletal system0.1576Moderately InformativeInherited
Xenopus ANatomical entity (XAN)viscus0.7359Moderately InformativeInherited
Xenopus ANatomical entity (XAN)ectoderm0.7635Moderately InformativeInherited
Xenopus ANatomical entity (XAN)mesenchyme0.000002352InformativeDirect
Xenopus ANatomical entity (XAN)anatomical direction0.00001516InformativeDirect
Xenopus ANatomical entity (XAN)neural plate0.00001632InformativeDirect
Xenopus ANatomical entity (XAN)pharyngeal region0.00002256InformativeDirect
Xenopus ANatomical entity (XAN)cardiovascular system0.00003084InformativeDirect
Xenopus ANatomical entity (XAN)cranial placode0.000161InformativeDirect
Xenopus ANatomical entity (XAN)neuron0.0006891InformativeDirect
Xenopus ANatomical entity (XAN)peripheral nervous system0.003079InformativeInherited
Xenopus ANatomical entity (XAN)lateral plate mesoderm0.01402InformativeInherited
Xenopus ANatomical entity (XAN)surface structure0.03613InformativeInherited
Xenopus ANatomical entity (XAN)skeletal system0.1178InformativeInherited
Xenopus ANatomical entity (XAN)limb0.6253InformativeInherited
Xenopus ANatomical entity (XAN)solid compound organ0.8094InformativeInherited
Xenopus ANatomical entity (XAN)neurogenic placode0.000005199Highly InformativeDirect
Xenopus ANatomical entity (XAN)involuted ventral mesoderm0.00001299Highly InformativeDirect
Xenopus ANatomical entity (XAN)blastema0.0002539Highly InformativeDirect
Xenopus ANatomical entity (XAN)hindlimb0.0002602Highly InformativeDirect
Xenopus ANatomical entity (XAN)primordium0.0007486Highly InformativeDirect
Xenopus ANatomical entity (XAN)cranium0.001184Highly InformativeInherited
Xenopus ANatomical entity (XAN)cranial nerve0.02389Highly InformativeInherited
Xenopus ANatomical entity (XAN)gustatory system0.02527Highly InformativeInherited
Xenopus ANatomical entity (XAN)branchial arch0.2134Highly InformativeInherited
Xenopus ANatomical entity (XAN)marginal zone1Highly InformativeInherited
Xenopus DEvelopment stage (XDE)post-embryonic stage0.7629Least InformativeInherited
Xenopus DEvelopment stage (XDE)premetamorphosis stage0.0004085Highly InformativeDirect

Document: XA annotation of SCOP domains

InterPro annotation
Cross references IPR008967 SSF49417 Protein matches
Abstract

This domain is found in a number of transcription factors, including p53, NFATC, TonEBP, STAT-1, and NFkappaB, where it is responsible for DNA-binding. These transcription factors play diverse roles in the regulation of cellular functions: the p53 tumour suppressor upregulates the expression of genes involved in cell cycle arrest and apoptosis [PubMed12826037]; NFATC regulates the production of effector proteins involved in coordinating the immune response [PubMed8990122]; TonEBP regulates gene expression induced by osmotic stress and helps regulate intracellular volume during cell growth [PubMed12729611]; STAT-1 plays an important role in B lymphocyte growth and function [PubMed12855573]; and NFkappaB is involved in the inflammatory response [PubMed12421671]. The DNA-binding domain acts to clamp, or in the case of TonEBP, encircle the DNA target in order to stabilize the protein-DNA complex [PubMed11780147]. Protein interactions may also serve to stabilize the protein-DNA complex, for example in the STAT-1 dimer the SH2 (Src homology 2) domain in each monomer is coupled to the DNA-binding domain to increase stability [PubMed9630226]. The DNA-binding domain consists of a beta-sandwich formed of 9 strands in 2 sheets with a Greek-key topology. This structure is found in many transcription factors, often within the DNA-binding domain.


InterPro database

PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 19 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a p53-like transcription factors domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 19 hidden Markov models representing the p53-like transcription factors superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@mrc-lmb.cam.ac.uk or use the feedback form.

© Copyright 2017 The SUPERFAMILY authors and Julian Gough.