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HSP20-like chaperones superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   HSP20-like chaperones [ 49763]
Superfamily:   HSP20-like chaperones [ 49764] (4)
Families:   HSP20 [ 49765]
  Co-chaperone p23-like [ 49768] (2)
  GS domain [ 101580] (2)
  Nuclear movement domain [ 117092] (2)


Superfamily statistics
Genomes (2,402) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 15,640 66,881 9
Proteins 15,337 66,074 9


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0.00119Least InformativeInherited
Enzyme Commission (EC)Acting on NADH or NADPH0.00000000003112Moderately InformativeDirect
Enzyme Commission (EC)With a heme protein as acceptor0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.04482Least InformativeInherited
Disease Ontology (DO)peripheral nervous system disease0.000001035InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of limbs0.1212Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the musculature0.28Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0.5394Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the lower limb0.04948Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of movement0.1217Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the musculature of the limbs0.0006946InformativeDirect
Phenotypic Abnormality (PA)Muscle weakness0.00947InformativeInherited
Phenotypic Abnormality (PA)Abnormal reflex0.02368InformativeInherited
Phenotypic Abnormality (PA)EMG abnormality0.0001081Highly InformativeDirect
Phenotypic Abnormality (PA)Lower limb muscle weakness0.129Highly InformativeInherited
Phenotypic Abnormality (PA)Areflexia0.1608Highly InformativeInherited

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)larval growth variant0Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.000000000001782Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.0000007556Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.006121Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.4577Least InformativeInherited
Worm Phenotype (WP)protein protein interaction variant0.00000000001802Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0.0000000001644Moderately InformativeDirect
Worm Phenotype (WP)movement variant0.0003019Moderately InformativeDirect
Worm Phenotype (WP)metal response variant0.002551InformativeInherited
Worm Phenotype (WP)endocytic transport defect0.06146InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.1007InformativeInherited
Worm Phenotype (WP)pathogen susceptibility increased0.000006957Highly InformativeDirect
Worm Phenotype (WP)cadmium hypersensitive0.000007875Highly InformativeDirect
Worm Phenotype (WP)peptide uptake by intestinal cell variant0.0007404Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)head0Moderately InformativeDirect
Zebrafish Anatomy (ZA)portion of tissue0Moderately InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0.05502Least InformativeInherited
Xenopus ANatomical entity (XAN)anatomical system1Least InformativeInherited
Xenopus ANatomical entity (XAN)musculoskeletal system0.000458Moderately InformativeDirect
Xenopus ANatomical entity (XAN)muscle0.003024InformativeInherited

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0.007325Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases0.02104Least InformativeInherited
Enzyme Commission (EC)Hydrolases0.1436Least InformativeInherited
Enzyme Commission (EC)Carbon-oxygen lyases0.00008475Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.01183Moderately InformativeInherited
Enzyme Commission (EC)Isomerases0.05682Moderately InformativeInherited
Enzyme Commission (EC)Acting on NADH or NADPH0.0000000000006631InformativeDirect
Enzyme Commission (EC)Omega peptidases0.000002037InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases0.001685InformativeInherited
Enzyme Commission (EC)With a heme protein as acceptor0Highly InformativeDirect
Enzyme Commission (EC)Other intramolecular oxidoreductases0.0000000001157Highly InformativeDirect

Document: EC annotation of SCOP domains

InterPro annotation
Cross references IPR008978 SSF49764 Protein matches
Abstract

Hsp20 is a mammalian small heat-shock protein family that occurs most abundantly in skeletal muscle and heart. It has a tendency to form dimers, via a disulphide linkage formed by an N-terminal cysteine, low heat stability and a poor chaperoning ability in comparison with other family members. Structurally, this and related proteins contain a beta-sandwich fold consisting of 8 strands in 2 beta-sheets in a greek-key topology [PubMed11702068].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a HSP20-like chaperones domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the HSP20-like chaperones superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]