SUPERFAMILY 1.75 HMM library and genome assignments server


Sialidases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   6-bladed beta-propeller [ 50938] (11)
Superfamily:   Sialidases [ 50939] (2)
Families:   Sialidases (neuraminidases) [ 50940] (9)
  Endo-alpha-sialidase [ 117276]


Superfamily statistics
Genomes (968) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 3,174 49,159 43
Proteins 2,811 48,689 43


Functional annotation
General category Metabolism
Detailed category Polysaccharide metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)nitrogen compound metabolic process0.0093230.2496Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.020770.3357Least InformativeInherited
Biological Process (BP)cellular lipid metabolic process1.526e-050.0002117Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process3.268e-050.0005637Moderately InformativeDirect
Biological Process (BP)membrane lipid metabolic process6.754e-106.698e-11InformativeDirect
Biological Process (BP)glycosphingolipid metabolic process2.646e-134.008e-15Highly InformativeDirect
Molecular Function (MF)hydrolase activity0.0002780.002538Least InformativeInherited
Molecular Function (MF)hydrolase activity, acting on glycosyl bonds3.816e-150InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.29790.4685Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.013970.1333Least InformativeInherited
Cellular Component (CC)vacuole0.00071465.698e-05InformativeDirect
Cellular Component (CC)lysosome1.147e-055.215e-07Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular component organization or biogenesis 0.02873 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.4117 Least Informative Inherited
Biological Process (BP) developmental process 0.1943 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 0.2809 Least Informative Inherited
Biological Process (BP) regulation of cellular process 0.6236 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.3229 Least Informative Inherited
Biological Process (BP) localization 0.001368 Least Informative Inherited
Biological Process (BP) response to stimulus 0.4964 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.2496 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.3357 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.437 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.7364 Least Informative Inherited
Biological Process (BP) nervous system development 4.863e-05 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 0.0007358 Moderately Informative Direct
Biological Process (BP) cellular lipid metabolic process 0.0002117 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 0.0002152 Moderately Informative Direct
Biological Process (BP) regulation of molecular function 0.0005174 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0005637 Moderately Informative Direct
Biological Process (BP) regulation of cell communication 0.00238 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 0.002312 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 0.00306 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.007417 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.008876 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.17 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.1147 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.01057 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.001597 Moderately Informative Inherited
Biological Process (BP) organ development 0.2236 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 0.03973 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.008587 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.006849 Moderately Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 1.919e-06 Informative Direct
Biological Process (BP) protein phosphorylation 1.59e-05 Informative Direct
Biological Process (BP) membrane lipid metabolic process 6.698e-11 Informative Direct
Biological Process (BP) cellular component movement 3.642e-05 Informative Direct
Biological Process (BP) central nervous system development 7.363e-05 Informative Direct
Biological Process (BP) response to external stimulus 0.0003648 Informative Direct
Biological Process (BP) positive regulation of signal transduction 0.0008022 Informative Direct
Biological Process (BP) positive regulation of phosphorus metabolic process 4.211e-07 Informative Direct
Biological Process (BP) peptidyl-amino acid modification 3.521e-07 Informative Direct
Biological Process (BP) cell projection organization 3.623e-08 Informative Direct
Biological Process (BP) cellular component morphogenesis 4.206e-07 Informative Direct
Biological Process (BP) locomotion 3.409e-05 Informative Direct
Biological Process (BP) positive regulation of catalytic activity 6.242e-06 Informative Direct
Biological Process (BP) regulation of kinase activity 2.721e-07 Informative Direct
Biological Process (BP) generation of neurons 1.051e-06 Informative Direct
Biological Process (BP) positive regulation of protein metabolic process 2.9e-06 Informative Direct
Biological Process (BP) localization of cell 0.0006397 Informative Direct
Biological Process (BP) glycosphingolipid metabolic process 4.008e-15 Highly Informative Direct
Biological Process (BP) chemotaxis 1.786e-06 Highly Informative Direct
Biological Process (BP) pattern specification process 3.509e-06 Highly Informative Direct
Biological Process (BP) axonogenesis 8.399e-11 Highly Informative Direct
Biological Process (BP) glial cell differentiation 1.168e-09 Highly Informative Direct
Biological Process (BP) peptidyl-tyrosine phosphorylation 3.649e-13 Highly Informative Direct
Biological Process (BP) telencephalon development 9.422e-11 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.002538 Least Informative Inherited
Molecular Function (MF) hydrolase activity, acting on glycosyl bonds 0 Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.4685 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.1333 Least Informative Inherited
Cellular Component (CC) extracellular region 0.0001486 Moderately Informative Direct
Cellular Component (CC) cell projection 0.004118 Moderately Informative Inherited
Cellular Component (CC) extracellular space 1.982e-06 Informative Direct
Cellular Component (CC) vacuole 5.698e-05 Informative Direct
Cellular Component (CC) neuron part 0.0003005 Informative Direct
Cellular Component (CC) lysosome 5.215e-07 Highly Informative Direct
Cellular Component (CC) dendrite 1.629e-07 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosidases, i.e. enzymes hydrolyzing O- and S-gl0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details) Document: DO annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Glycosylases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0.8Least InformativeInherited
Biological processHost-virus interaction0Moderately InformativeDirect
Biological processProtein transport3.163e-10Moderately InformativeDirect
Biological processVirus entry into host cell0InformativeDirect
Biological processViral attachment to host cell0InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentGolgi apparatus5.959e-11Moderately InformativeDirect
Cellular componentVirion0InformativeDirect
Cellular componentHost membrane0InformativeDirect
Cellular componentLysosome5.866e-05InformativeDirect
DomainTransmembrane0Least InformativeDirect
DomainSignal-anchor0Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationReceptor5.149e-07Moderately InformativeDirect
Post-translational modificationGlycosidase0InformativeDirect
Post-translational modificationHemagglutinin0Highly InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect
Post-translational modificationDisulfide bond0Least InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR011040 SSF50939 Protein matches
Abstract

Neuraminidases (sialidases) hydrolyse the non-reducing, terminal sialic acid linkage in various natural substrates, such as glycoproteins, glycolipids, gangliosides, and polysaccharides [PubMed12374200]. In mammals, neuraminidases occur in the lysosome, the cytosol, and associated with the plasma membrane. Neuraminidases have also been implicated in the pathogenesis of many diseases. For example, in viruses neuraminidases enable the transport of the virus through mucin, the eruption of the virus from the infected host cell, and the prevention of self-aggregation of virus particles through the destruction of the host cell receptor recognised by the virus [PubMed14561719]. Eukaryotic, bacterial and viral neuraminidases share highly conserved regions of beta-sheet motifs. Bacterial neuraminidases often possess domains in addition to the catalytic neuraminidase domain, for instance the neuraminidase from Micromonospora viridifaciens contains three domains, of which the catalytic domain described here is the N-terminal domain [PubMed8591030]. Similarly, leech neuraminidase is a multidomain protein, where the catalytic domain is the C-terminal domain [PubMed9878409]. In several paramyxoviruses, neuraminidase forms part of the multi-functional haemagglutinin-neuraminidase glycoprotein found on the viral envelope [PubMed14729348].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 15 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Sialidases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 15 hidden Markov models representing the Sialidases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Yeast Phenotype (YP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]