SUPERFAMILY 1.75 HMM library and genome assignments server


Quinoprotein alcohol dehydrogenase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   8-bladed beta-propeller [ 50997] (3)
Superfamily:   Quinoprotein alcohol dehydrogenase-like [ 50998]
Families:   Quinoprotein alcohol dehydrogenase-like [ 50999] (3)


Superfamily statistics
Genomes (1,792) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 15,476 24,466 9
Proteins 14,395 22,610 9


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular component organization or biogenesis0.32490.755Least InformativeInherited
Biological Process (BP)single-organism cellular process0.095740.9723Least InformativeInherited
Biological Process (BP)developmental process0.31141Least InformativeInherited
Biological Process (BP)response to stimulus0.56610.8538Least InformativeInherited
Biological Process (BP)regulation of cellular process0.0068321Least InformativeInherited
Biological Process (BP)anatomical structure morphogenesis0.019811Moderately InformativeInherited
Biological Process (BP)cellular component biogenesis0.067550.007421Moderately InformativeInherited
Biological Process (BP)single-organism developmental process0.18731Moderately InformativeInherited
Biological Process (BP)cellular response to stress0.05424.529e-05Moderately InformativeInherited
Biological Process (BP)cellular response to chemical stimulus0.15210.01091Moderately InformativeInherited
Biological Process (BP)response to organic substance0.24420.08773Moderately InformativeInherited
Biological Process (BP)signal transduction0.021070.001746Moderately InformativeInherited
Biological Process (BP)cell projection organization0.0015120.4678InformativeInherited
Biological Process (BP)cellular component morphogenesis0.0024430.8136InformativeInherited
Biological Process (BP)anatomical structure formation involved in morphogenesis0.0077080.4664InformativeInherited
Biological Process (BP)ER-nucleus signaling pathway0.00010450Highly InformativeDirect
Biological Process (BP)response to endoplasmic reticulum stress0.00025561.896e-14Highly InformativeDirect
Biological Process (BP)response to topologically incorrect protein7.337e-050Highly InformativeDirect
Biological Process (BP)cellular component assembly involved in morphogenesis0.00011740.02464Highly InformativeInherited
Biological Process (BP)cell projection assembly0.00076860.00753Highly InformativeInherited
Molecular Function (MF)hydrolase activity0.85351Least InformativeInherited
Molecular Function (MF)hydrolase activity, acting on ester bonds0.14970.1121Moderately InformativeInherited
Molecular Function (MF)nuclease activity0.00052752.201e-06InformativeDirect
Molecular Function (MF)endoribonuclease activity3.001e-060.0004453Highly InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle0.77951Least InformativeInherited
Cellular Component (CC)cytoplasmic part11Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.48620.03025Least InformativeInherited
Cellular Component (CC)membrane0.62461Least InformativeInherited
Cellular Component (CC)endomembrane system0.00974.797e-06Moderately InformativeInherited
Cellular Component (CC)endoplasmic reticulum0.0014852.499e-08Moderately InformativeInherited
Cellular Component (CC)organelle membrane0.067920.0007443Moderately InformativeInherited
Cellular Component (CC)endoplasmic reticulum membrane9.884e-056.549e-12InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism cellular process 0.9723 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.755 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 0.8538 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.7488 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.7717 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.949 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.05062 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.1798 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular response to stress 4.529e-05 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.007421 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0.01091 Moderately Informative Inherited
Biological Process (BP) response to organic substance 0.08773 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 0.8663 Moderately Informative Inherited
Biological Process (BP) signal transduction 0.001746 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.3974 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.9498 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.2432 Moderately Informative Inherited
Biological Process (BP) organ development 1 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.9537 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.03823 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.9555 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.7735 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) RNA metabolic process 0.03118 Moderately Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0.0743 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.4768 Moderately Informative Inherited
Biological Process (BP) protein phosphorylation 1.506e-05 Informative Direct
Biological Process (BP) ribonucleoprotein complex biogenesis 0.0002073 Informative Direct
Biological Process (BP) enzyme linked receptor protein signaling pathway 0.1289 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.8136 Informative Inherited
Biological Process (BP) cell projection organization 0.4678 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.4664 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 0.8139 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 0.937 Informative Inherited
Biological Process (BP) positive regulation of gene expression 0.9968 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.7963 Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 0.01144 Informative Inherited
Biological Process (BP) negative regulation of biosynthetic process 0.3982 Informative Inherited
Biological Process (BP) negative regulation of cellular metabolic process 0.7275 Informative Inherited
Biological Process (BP) negative regulation of protein metabolic process 0.2323 Informative Inherited
Biological Process (BP) positive regulation of catalytic activity 0.005029 Informative Inherited
Biological Process (BP) regulation of hydrolase activity 0.01363 Informative Inherited
Biological Process (BP) regulation of protein phosphorylation 0.2963 Informative Inherited
Biological Process (BP) positive regulation of phosphorus metabolic process 0.03439 Informative Inherited
Biological Process (BP) regulation of kinase activity 0.0982 Informative Inherited
Biological Process (BP) positive regulation of protein metabolic process 0.01297 Informative Inherited
Biological Process (BP) ossification 6.38e-05 Highly Informative Direct
Biological Process (BP) regulation of translation 0.0006461 Highly Informative Direct
Biological Process (BP) ER-nucleus signaling pathway 0 Highly Informative Direct
Biological Process (BP) response to endoplasmic reticulum stress 1.896e-14 Highly Informative Direct
Biological Process (BP) response to topologically incorrect protein 0 Highly Informative Direct
Biological Process (BP) transmembrane receptor protein tyrosine kinase signaling pathway 0.01921 Highly Informative Inherited
Biological Process (BP) cellular component assembly involved in morphogenesis 0.02464 Highly Informative Inherited
Biological Process (BP) cell projection assembly 0.00753 Highly Informative Inherited
Biological Process (BP) negative regulation of cellular macromolecule biosynthetic process 0.3012 Highly Informative Inherited
Biological Process (BP) cellular response to biotic stimulus 0.00903 Highly Informative Inherited
Molecular Function (MF) transferase activity 0.9115 Least Informative Inherited
Molecular Function (MF) hydrolase activity 1 Least Informative Inherited
Molecular Function (MF) oxidoreductase activity 0.3384 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.07047 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.1121 Moderately Informative Inherited
Molecular Function (MF) nuclease activity 2.201e-06 Informative Direct
Molecular Function (MF) oxidoreductase activity, acting on CH-OH group of donors 0.0002433 Informative Direct
Molecular Function (MF) kinase activity 0.01825 Informative Inherited
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 0.007048 Informative Inherited
Molecular Function (MF) endoribonuclease activity 0.0004453 Highly Informative Direct
Molecular Function (MF) protein kinase activity 0.001172 Highly Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.03025 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) protein complex 0.2364 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) endoplasmic reticulum 2.499e-08 Moderately Informative Direct
Cellular Component (CC) endomembrane system 4.797e-06 Moderately Informative Direct
Cellular Component (CC) organelle membrane 0.0007443 Moderately Informative Direct
Cellular Component (CC) ribonucleoprotein complex 0.07009 Moderately Informative Inherited
Cellular Component (CC) intrinsic to membrane 0.956 Moderately Informative Inherited
Cellular Component (CC) ubiquitin ligase complex 0.0006361 Informative Direct
Cellular Component (CC) endoplasmic reticulum membrane 6.549e-12 Informative Direct
Cellular Component (CC) integral to membrane 0.6932 Informative Inherited
Cellular Component (CC) integral to organelle membrane 2.361e-05 Highly Informative Direct
Cellular Component (CC) cullin-RING ubiquitin ligase complex 0.00011 Highly Informative Direct
Cellular Component (CC) intrinsic to endoplasmic reticulum membrane 0.01876 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases1.049e-06Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)With a cytochrome as acceptor1.147e-14Highly InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details) Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant0.0136Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.02876Least InformativeInherited
Worm Phenotype (WP)developmental timing variant0.3949Least InformativeInherited
Worm Phenotype (WP)larval development variant0.6469Least InformativeInherited
Worm Phenotype (WP)growth variant0.9682Least InformativeInherited
Worm Phenotype (WP)locomotion variant0.05863Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.1991Moderately InformativeInherited
Worm Phenotype (WP)protein metabolism variant0.0001013InformativeDirect
Worm Phenotype (WP)activity level variant0.001129InformativeInherited
Worm Phenotype (WP)lipid metabolism variant0.09966InformativeInherited
Worm Phenotype (WP)fat content increased0.0005572Highly InformativeDirect
Worm Phenotype (WP)early larval arrest0.0007819Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)head0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect
Zebrafish Anatomy (ZA)eye0Moderately InformativeDirect
Zebrafish Anatomy (ZA)digestive system0Moderately InformativeDirect
Zebrafish Anatomy (ZA)gut0InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases9.699e-10Least InformativeDirect
Enzyme Commission (EC)Transferring phosphorous-containing groups2.057e-05Least InformativeDirect
Enzyme Commission (EC)Hydrolases1Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on the CH-OH group of donors3.351e-12Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase0InformativeDirect
Enzyme Commission (EC)Exoribonucleases producing 5'-phosphomonoesters2.708e-06InformativeDirect
Enzyme Commission (EC)With a cytochrome as acceptor0Highly InformativeDirect
Enzyme Commission (EC)Poly(A)-specific ribonuclease3.468e-08Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processUbl conjugation pathway3.866e-10InformativeDirect
Biological processTranslation regulation0.0009105InformativeDirect
Biological processUnfolded protein response0Highly InformativeDirect
Cellular componentNucleus2.911e-07Least InformativeDirect
Cellular componentMembrane3.737e-07Least InformativeDirect
Cellular componentCytoplasm1Least InformativeInherited
Cellular componentCytoskeleton0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum7.083e-10Moderately InformativeDirect
Cellular componentCell membrane0.7466Moderately InformativeInherited
Cellular componentMicrotubule0InformativeDirect
Cellular componentCell outer membrane0InformativeDirect
Cellular componentPeriplasm7.832e-06InformativeDirect
DomainRepeat4.014e-14Least InformativeDirect
DomainWD repeat0InformativeDirect
Molecular functionCalcium8.284e-06Moderately InformativeDirect
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationKinase0.004704Moderately InformativeInherited
Post-translational modificationSerine/threonine-protein kinase3.912e-13InformativeDirect
Post-translational modificationPhosphoprotein0.0009394Least InformativeDirect
Post-translational modificationPalmitate0Moderately InformativeDirect
Post-translational modificationADP-ribosylation1.876e-05InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism4.623e-15Least InformativeDirect
UniPathway (UP)protein ubiquitination0Moderately InformativeDirect

Document: UP annotation of SCOP domains

InterPro annotation
Cross references IPR011047 SSF50998 Protein matches
Abstract

Quinoprotein alcohol dehydrogenases are a family of proteins found in methylotrophic or autotrophic bacteria. These quinoproteins use pyrroloquinoline quinone as their prosthetic group. There are three types of alcohol dehydrogenases: type I includes methanol dehydrogenase and ethanol dehydrogenase, type II includes soluble quinohaemoprotein with a C-terminal containing haem C, and type III includes quinoprotein alcohol dehydrogenase with a C-terminal cytochrome C domain [PubMed11761326]. These quinoproteins contain an 8-bladed beta-propeller motif, which is present in the N-terminal domain of quinoprotein alcohol dehydrogenase, ethanol dehydrogenase, and the heavy chain (alpha subunit) of methanol dehydrogenase [PubMed11714714, PubMed12686116, PubMed12686102].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Quinoprotein alcohol dehydrogenase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the Quinoprotein alcohol dehydrogenase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]