|
GO term |
FDR (all) |
IC level |
SDFO level |
Annotation (direct or inherited) |
| Biological Process (BP) |
tRNA dihydrouridine synthesis |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
lactate metabolic process |
5.631e-05 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
nucleobase-containing compound metabolic process |
9.194e-05 |
0.7305 |
-- |
DIRECT |
| Biological Process (BP) |
pyrimidine nucleobase metabolic process |
0 |
2.222 |
-- |
DIRECT |
| Biological Process (BP) |
'de novo' pyrimidine nucleobase biosynthetic process |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
glutamate metabolic process |
1.146e-09 |
2.222 |
-- |
DIRECT |
| Biological Process (BP) |
glutamate biosynthetic process |
2.081e-14 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
tRNA processing |
1.231e-11 |
1.745 |
-- |
DIRECT |
| Biological Process (BP) |
metabolic process |
2.34e-10 |
0.2411 |
-- |
DIRECT |
| Biological Process (BP) |
deoxyribonucleoside metabolic process |
0 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
jasmonic acid metabolic process |
0.0009849 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
jasmonic acid biosynthetic process |
3.735e-05 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
regulation of photosynthesis |
2.628e-13 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
viral reproduction |
9.684e-06 |
2.222 |
-- |
DIRECT |
| Biological Process (BP) |
virus-host interaction |
7.543e-05 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
carboxylic acid metabolic process |
5.261e-05 |
0.8416 |
-- |
DIRECT |
| Biological Process (BP) |
pyrimidine nucleobase biosynthetic process |
0.0009047 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
viral reproductive process |
0.0002098 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
ncRNA metabolic process |
1.661e-05 |
1.444 |
-- |
DIRECT |
| Biological Process (BP) |
oxoacid metabolic process |
4.01e-07 |
0.8297 |
-- |
DIRECT |
| Biological Process (BP) |
dicarboxylic acid biosynthetic process |
5.857e-08 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
cellular metabolic process |
2.517e-09 |
0.2708 |
-- |
DIRECT |
| Biological Process (BP) |
nucleobase biosynthetic process |
3.352e-11 |
2.097 |
-- |
DIRECT |
| Biological Process (BP) |
deoxyribonucleoside catabolic process |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
pyrimidine deoxyribonucleoside metabolic process |
3.747e-07 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
pyrimidine deoxyribonucleoside catabolic process |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
pyrimidine nucleoside catabolic process |
3.639e-08 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
interaction with host |
7.307e-05 |
2.222 |
-- |
DIRECT |
| Biological Process (BP) |
organonitrogen compound metabolic process |
3.217e-08 |
0.699 |
-- |
DIRECT |
| Biological Process (BP) |
lipid metabolic process |
0.01692 |
0.9431 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
glycerophospholipid metabolic process |
0.002734 |
1.699 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
phosphorus metabolic process |
1 |
0.8013 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
phospholipid biosynthetic process |
0.101 |
1.62 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
glycerolipid biosynthetic process |
0.02885 |
1.745 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
organophosphate biosynthetic process |
0.07917 |
1.155 |
-- |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
nucleoside catabolic process |
0.04233 |
1.854 |
-- |
INHERITED FROM: pyrimidine nucleoside catabolic process || thymidine catabolic process || pyrimidine deoxyribonucleoside catabolic process || deoxyribonucleoside catabolic process |
| Biological Process (BP) |
nucleoside metabolic process |
0.0577 |
1.444 |
-- |
INHERITED FROM: pyrimidine nucleoside catabolic process || thymidine catabolic process || deoxyribonucleoside metabolic process || thymidine metabolic process || pyrimidine deoxyribonucleoside catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine nucleoside metabolic process |
| Biological Process (BP) |
glycosyl compound catabolic process |
0.02181 |
1.796 |
-- |
INHERITED FROM: pyrimidine deoxyribonucleoside catabolic process || deoxyribonucleoside catabolic process || pyrimidine nucleoside catabolic process || thymidine catabolic process |
| Biological Process (BP) |
catabolic process |
0.02678 |
0.7852 |
-- |
INHERITED FROM: nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || thymidine catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
cellular nitrogen compound metabolic process |
0.05782 |
0.585 |
-- |
INHERITED FROM: nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine nucleoside metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine-containing compound catabolic process || nucleobase-containing small molecule metabolic process || thymidine metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || nucleobase biosynthetic process || ncRNA processing || ncRNA metabolic process || nucleobase metabolic process || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || nucleobase-containing compound metabolic process || pyrimidine-containing compound biosynthetic process || tRNA processing || pyrimidine nucleoside catabolic process || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
interspecies interaction between organisms |
0.001692 |
1.796 |
-- |
INHERITED FROM: symbiosis, encompassing mutualism through parasitism || interaction with host || virus-host interaction |
| Biological Process (BP) |
RNA processing |
0.00201 |
1.377 |
-- |
INHERITED FROM: ncRNA processing || tRNA modification || tRNA processing || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
reproductive process |
0.8892 |
1.143 |
-- |
INHERITED FROM: viral reproductive process || virus-host interaction |
| Biological Process (BP) |
regulation of biological process |
1 |
0.4486 |
-- |
INHERITED FROM: regulation of photosynthesis |
| Biological Process (BP) |
biological regulation |
1 |
0.4202 |
-- |
INHERITED FROM: regulation of photosynthesis |
| Biological Process (BP) |
cellular biosynthetic process |
0.006085 |
0.5498 |
-- |
INHERITED FROM: photorespiration || jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process || glutamate biosynthetic process || glycerophospholipid biosynthetic process || cellular metabolic compound salvage |
| Biological Process (BP) |
organic substance biosynthetic process |
0.2794 |
0.5376 |
-- |
INHERITED FROM: jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || organonitrogen compound biosynthetic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process || glutamate biosynthetic process || glycerophospholipid biosynthetic process |
| Biological Process (BP) |
organic acid metabolic process |
0.002977 |
0.8239 |
-- |
INHERITED FROM: jasmonic acid biosynthetic process || carboxylic acid metabolic process || lactate metabolic process || dicarboxylic acid biosynthetic process || glutamine family amino acid metabolic process || glutamine family amino acid biosynthetic process || glutamate metabolic process || jasmonic acid metabolic process || glutamate biosynthetic process || oxoacid metabolic process |
| Biological Process (BP) |
single-organism biosynthetic process |
0.3493 |
0.983 |
-- |
INHERITED FROM: glutamine family amino acid biosynthetic process || jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || glutamate biosynthetic process |
| Biological Process (BP) |
organic acid biosynthetic process |
0.04429 |
1.108 |
-- |
INHERITED FROM: glutamine family amino acid biosynthetic process || jasmonic acid biosynthetic process || glutamate biosynthetic process || dicarboxylic acid biosynthetic process |
| Biological Process (BP) |
carboxylic acid biosynthetic process |
0.007044 |
1.108 |
-- |
INHERITED FROM: glutamine family amino acid biosynthetic process || jasmonic acid biosynthetic process || glutamate biosynthetic process || dicarboxylic acid biosynthetic process |
| Biological Process (BP) |
cellular amino acid biosynthetic process |
0.3009 |
1.301 |
-- |
INHERITED FROM: glutamine family amino acid biosynthetic process || glutamate biosynthetic process |
| Biological Process (BP) |
alpha-amino acid metabolic process |
0.02881 |
1.18 |
-- |
INHERITED FROM: glutamate biosynthetic process || glutamate metabolic process |
| Biological Process (BP) |
macromolecule modification |
0.7868 |
0.8416 |
-- |
INHERITED FROM: tRNA modification || RNA modification || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
macromolecule metabolic process |
1 |
0.4634 |
-- |
INHERITED FROM: tRNA metabolic process || ncRNA metabolic process || ncRNA processing || tRNA modification || tRNA processing || RNA modification || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
nucleic acid metabolic process |
0.8642 |
0.9066 |
-- |
INHERITED FROM: tRNA metabolic process || ncRNA processing || ncRNA metabolic process || tRNA modification || tRNA processing || RNA modification || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
cellular nitrogen compound catabolic process |
0.002115 |
1.301 |
-- |
INHERITED FROM: thymidine catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || pyrimidine nucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
aromatic compound catabolic process |
0.3718 |
1.252 |
-- |
INHERITED FROM: thymidine catabolic process || deoxyribonucleoside catabolic process || pyrimidine nucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process |
| Biological Process (BP) |
heterocycle catabolic process |
0.00225 |
1.301 |
-- |
INHERITED FROM: thymidine catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || pyrimidine nucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
organic cyclic compound catabolic process |
0.004656 |
1.237 |
-- |
INHERITED FROM: thymidine catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || pyrimidine nucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
glycosyl compound metabolic process |
0.002253 |
1.377 |
-- |
INHERITED FROM: thymidine catabolic process || deoxyribonucleoside metabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine nucleoside metabolic process || pyrimidine nucleoside catabolic process || thymidine metabolic process || pyrimidine deoxyribonucleoside catabolic process |
| Biological Process (BP) |
biological_process |
1 |
0 |
-- |
INHERITED FROM: pyrimidine nucleoside metabolic process || carboxylic acid metabolic process || virus-host interaction || deoxyribonucleoside metabolic process || nucleobase biosynthetic process || jasmonic acid metabolic process || nucleobase-containing compound metabolic process || jasmonic acid biosynthetic process || interaction with host || glutamine family amino acid biosynthetic process || ncRNA processing || viral reproduction || tRNA modification || tRNA metabolic process || organonitrogen compound metabolic process || organic cyclic compound metabolic process || metabolic process || pyrimidine nucleoside catabolic process || dicarboxylic acid biosynthetic process || pyrimidine-containing compound catabolic process || single-organism metabolic process || pyrimidine deoxyribonucleoside catabolic process || tRNA processing || lactate metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || viral reproductive process || multi-organism cellular process || cellular metabolic compound salvage || glutamate metabolic process || nucleobase-containing small molecule metabolic process || regulation of photosynthesis || pyrimidine deoxyribonucleoside metabolic process || glutamine family amino acid metabolic process || pyrimidine-containing compound biosynthetic process || RNA modification || pyrimidine nucleobase catabolic process || cellular metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || glutamate biosynthetic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || thymidine metabolic process || oxoacid metabolic process || glycerophospholipid biosynthetic process || photorespiration || symbiosis, encompassing mutualism through parasitism || organonitrogen compound biosynthetic process || pyrimidine nucleobase biosynthetic process || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
organic substance metabolic process |
1 |
0.2676 |
-- |
INHERITED FROM: pyrimidine nucleoside metabolic process || carboxylic acid metabolic process || lactate metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || glutamate biosynthetic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || thymidine metabolic process || deoxyribonucleoside metabolic process || nucleobase biosynthetic process || glutamate metabolic process || jasmonic acid metabolic process || organonitrogen compound metabolic process || organic cyclic compound metabolic process || nucleobase-containing small molecule metabolic process || nucleobase-containing compound metabolic process || pyrimidine nucleoside catabolic process || glycerophospholipid biosynthetic process || jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine-containing compound catabolic process || organonitrogen compound biosynthetic process || glutamine family amino acid metabolic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || ncRNA processing || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || pyrimidine-containing compound biosynthetic process || tRNA processing || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
cellular process |
0.3881 |
0.1415 |
-- |
INHERITED FROM: pyrimidine nucleoside metabolic process || carboxylic acid metabolic process || lactate metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || viral reproductive process || multi-organism cellular process || cellular metabolic compound salvage || virus-host interaction || deoxyribonucleoside metabolic process || nucleobase biosynthetic process || glutamate metabolic process || jasmonic acid metabolic process || nucleobase-containing small molecule metabolic process || nucleobase-containing compound metabolic process || jasmonic acid biosynthetic process || pyrimidine deoxyribonucleoside metabolic process || glutamine family amino acid metabolic process || glutamine family amino acid biosynthetic process || ncRNA processing || viral reproduction || tRNA modification || pyrimidine-containing compound biosynthetic process || RNA modification || pyrimidine nucleobase catabolic process || tRNA metabolic process || cellular metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || glutamate biosynthetic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || thymidine metabolic process || oxoacid metabolic process || pyrimidine nucleoside catabolic process || glycerophospholipid biosynthetic process || photorespiration || dicarboxylic acid biosynthetic process || pyrimidine-containing compound catabolic process || pyrimidine nucleobase biosynthetic process || pyrimidine deoxyribonucleoside catabolic process || tRNA processing || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
small molecule metabolic process |
0.01159 |
0.6421 |
-- |
INHERITED FROM: pyrimidine nucleoside metabolic process || carboxylic acid metabolic process || lactate metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || nucleobase-containing small molecule metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || nucleobase metabolic process || glutamate biosynthetic process || pyrimidine nucleoside catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || pyrimidine deoxyribonucleoside metabolic process || thymidine metabolic process || glutamine family amino acid metabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || glutamate metabolic process || pyrimidine deoxyribonucleoside catabolic process || jasmonic acid metabolic process || oxoacid metabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
primary metabolic process |
1 |
0.2976 |
-- |
INHERITED FROM: pyrimidine nucleoside metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || nucleobase-containing small molecule metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || nucleobase-containing compound metabolic process || glutamate biosynthetic process || pyrimidine nucleoside catabolic process || glycerophospholipid biosynthetic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || thymidine metabolic process || glutamine family amino acid metabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || ncRNA processing || glutamate metabolic process || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || tRNA processing || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
single-organism metabolic process |
3.367e-07 |
0.5376 |
Least Informative |
DIRECT |
| Biological Process (BP) |
organic cyclic compound metabolic process |
0.000597 |
0.5817 |
Least Informative |
DIRECT |
| Biological Process (BP) |
nitrogen compound metabolic process |
0.04471 |
0.5171 |
Least Informative |
INHERITED FROM: organonitrogen compound metabolic process || pyrimidine nucleoside metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || nucleobase-containing small molecule metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || nucleobase-containing compound metabolic process || glutamate biosynthetic process || pyrimidine nucleoside catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine-containing compound catabolic process || organonitrogen compound biosynthetic process || thymidine metabolic process || glutamine family amino acid metabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || ncRNA processing || glutamate metabolic process || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || pyrimidine-containing compound biosynthetic process || tRNA processing || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
heterocycle metabolic process |
0.06363 |
0.6308 |
Least Informative |
INHERITED FROM: nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine nucleoside metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound metabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine-containing compound catabolic process || nucleobase-containing small molecule metabolic process || thymidine metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || nucleobase biosynthetic process || ncRNA processing || ncRNA metabolic process || nucleobase metabolic process || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || nucleobase-containing compound metabolic process || pyrimidine-containing compound biosynthetic process || tRNA processing || pyrimidine nucleoside catabolic process || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
regulation of metabolic process |
1 |
0.6946 |
Least Informative |
INHERITED FROM: regulation of photosynthesis |
| Biological Process (BP) |
regulation of cellular process |
1 |
0.5317 |
Least Informative |
INHERITED FROM: regulation of photosynthesis |
| Biological Process (BP) |
biosynthetic process |
0.04174 |
0.52 |
Least Informative |
INHERITED FROM: photorespiration || jasmonic acid biosynthetic process || dicarboxylic acid biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || organonitrogen compound biosynthetic process || pyrimidine nucleobase biosynthetic process || glutamine family amino acid biosynthetic process || nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process || glutamate biosynthetic process || glycerophospholipid biosynthetic process || cellular metabolic compound salvage |
| Biological Process (BP) |
cellular macromolecule metabolic process |
1 |
0.4976 |
Least Informative |
INHERITED FROM: tRNA metabolic process || ncRNA processing || ncRNA metabolic process || tRNA modification || tRNA processing || RNA modification || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
cellular aromatic compound metabolic process |
0.06548 |
0.6271 |
Least Informative |
INHERITED FROM: pyrimidine nucleoside metabolic process || tRNA metabolic process || 'de novo' pyrimidine nucleobase biosynthetic process || nucleobase-containing small molecule metabolic process || pyrimidine nucleobase metabolic process || thymidine catabolic process || ncRNA metabolic process || nucleobase metabolic process || nucleobase-containing compound metabolic process || pyrimidine nucleoside catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || thymidine metabolic process || deoxyribonucleoside metabolic process || pyrimidine nucleobase biosynthetic process || nucleobase biosynthetic process || ncRNA processing || pyrimidine deoxyribonucleoside catabolic process || tRNA modification || tRNA processing || RNA modification || tRNA dihydrouridine synthesis || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
nucleobase-containing small molecule metabolic process |
2.751e-07 |
1.086 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
organonitrogen compound biosynthetic process |
0.0001775 |
0.8861 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
phosphate-containing compound metabolic process |
1 |
0.8182 |
Moderately Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
lipid biosynthetic process |
0.2592 |
1.18 |
Moderately Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
organophosphate metabolic process |
0.8053 |
0.9914 |
Moderately Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
cellular lipid metabolic process |
0.05528 |
0.9747 |
Moderately Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
cellular catabolic process |
0.0125 |
0.8928 |
Moderately Informative |
INHERITED FROM: nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || thymidine catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
organic substance catabolic process |
0.004563 |
0.8297 |
Moderately Informative |
INHERITED FROM: nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || thymidine catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
multi-organism process |
0.08349 |
1.086 |
Moderately Informative |
INHERITED FROM: symbiosis, encompassing mutualism through parasitism || interaction with host || viral reproductive process || viral reproduction || multi-organism cellular process || virus-host interaction |
| Biological Process (BP) |
reproduction |
1 |
1.097 |
Moderately Informative |
INHERITED FROM: viral reproductive process || virus-host interaction |
| Biological Process (BP) |
heterocycle biosynthetic process |
0.7751 |
0.9355 |
Moderately Informative |
INHERITED FROM: pyrimidine nucleobase biosynthetic process || nucleobase biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process |
| Biological Process (BP) |
organic cyclic compound biosynthetic process |
0.6913 |
0.8928 |
Moderately Informative |
INHERITED FROM: pyrimidine nucleobase biosynthetic process || nucleobase biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process |
| Biological Process (BP) |
cellular nitrogen compound biosynthetic process |
0.7248 |
0.9136 |
Moderately Informative |
INHERITED FROM: pyrimidine nucleobase biosynthetic process || 'de novo' pyrimidine nucleobase biosynthetic process || pyrimidine-containing compound biosynthetic process |
| Biological Process (BP) |
regulation of cellular metabolic process |
1 |
0.7905 |
Moderately Informative |
INHERITED FROM: regulation of photosynthesis |
| Biological Process (BP) |
monocarboxylic acid metabolic process |
0.007035 |
1.155 |
Moderately Informative |
INHERITED FROM: jasmonic acid metabolic process || jasmonic acid biosynthetic process || lactate metabolic process |
| Biological Process (BP) |
small molecule biosynthetic process |
0.9423 |
1 |
Moderately Informative |
INHERITED FROM: glutamine family amino acid biosynthetic process || jasmonic acid biosynthetic process || glutamate biosynthetic process || dicarboxylic acid biosynthetic process |
| Biological Process (BP) |
cellular amino acid metabolic process |
0.1776 |
1.036 |
Moderately Informative |
INHERITED FROM: glutamine family amino acid biosynthetic process || glutamate biosynthetic process || glutamate metabolic process || glutamine family amino acid metabolic process |
| Biological Process (BP) |
gene expression |
0.2956 |
0.8729 |
Moderately Informative |
INHERITED FROM: tRNA modification || tRNA processing || ncRNA processing || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
RNA metabolic process |
0.1013 |
1.086 |
Moderately Informative |
INHERITED FROM: tRNA modification || tRNA processing || tRNA metabolic process || ncRNA processing || ncRNA metabolic process || RNA modification || tRNA dihydrouridine synthesis |
| Biological Process (BP) |
carbohydrate derivative metabolic process |
0.2061 |
1.018 |
Moderately Informative |
INHERITED FROM: thymidine catabolic process || deoxyribonucleoside metabolic process || deoxyribonucleoside catabolic process || pyrimidine nucleoside metabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside metabolic process || pyrimidine nucleoside catabolic process || thymidine metabolic process |
| Biological Process (BP) |
organic hydroxy compound metabolic process |
0.03458 |
1.208 |
Moderately Informative |
INHERITED FROM: lactate metabolic process |
| Biological Process (BP) |
tRNA metabolic process |
4.127e-09 |
1.699 |
Informative |
DIRECT |
| Biological Process (BP) |
glutamine family amino acid metabolic process |
2.976e-07 |
1.745 |
Informative |
DIRECT |
| Biological Process (BP) |
RNA modification |
4.525e-10 |
1.62 |
Informative |
DIRECT |
| Biological Process (BP) |
ncRNA processing |
7.381e-07 |
1.553 |
Informative |
DIRECT |
| Biological Process (BP) |
cellular metabolic compound salvage |
2.942e-05 |
1.699 |
Informative |
DIRECT |
| Biological Process (BP) |
pyrimidine-containing compound metabolic process |
0 |
1.62 |
Informative |
DIRECT |
| Biological Process (BP) |
phospholipid metabolic process |
0.02614 |
1.495 |
Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
glycerolipid metabolic process |
0.2847 |
1.523 |
Informative |
INHERITED FROM: glycerophospholipid biosynthetic process |
| Biological Process (BP) |
nucleobase-containing compound catabolic process |
0.3498 |
1.377 |
Informative |
INHERITED FROM: pyrimidine nucleoside catabolic process || thymidine catabolic process || pyrimidine deoxyribonucleoside catabolic process || deoxyribonucleoside catabolic process |
| Biological Process (BP) |
carbohydrate derivative catabolic process |
0.04541 |
1.553 |
Informative |
INHERITED FROM: pyrimidine nucleoside catabolic process || thymidine catabolic process || deoxyribonucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process |
| Biological Process (BP) |
multi-organism reproductive process |
0.00142 |
1.745 |
Informative |
INHERITED FROM: viral reproductive process || virus-host interaction |
| Biological Process (BP) |
monocarboxylic acid biosynthetic process |
0.7438 |
1.523 |
Informative |
INHERITED FROM: jasmonic acid biosynthetic process |
| Biological Process (BP) |
alpha-amino acid biosynthetic process |
0.002107 |
1.469 |
Informative |
INHERITED FROM: glutamate biosynthetic process |
| Biological Process (BP) |
organonitrogen compound catabolic process |
0.03443 |
1.268 |
Informative |
INHERITED FROM: thymidine catabolic process || nucleobase catabolic process || deoxyribonucleoside catabolic process || pyrimidine-containing compound catabolic process || pyrimidine nucleoside catabolic process || pyrimidine deoxyribonucleoside catabolic process || pyrimidine nucleobase catabolic process |
| Biological Process (BP) |
pyrimidine nucleoside metabolic process |
1.522e-06 |
2.222 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
tRNA modification |
3.505e-05 |
1.854 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
glutamine family amino acid biosynthetic process |
3.536e-11 |
2.222 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
nucleobase metabolic process |
0 |
2 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
photorespiration |
2.592e-10 |
2.222 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
symbiosis, encompassing mutualism through parasitism |
0.0004811 |
1.854 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
multi-organism cellular process |
0.0005755 |
2 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
glycerophospholipid biosynthetic process |
0.0003731 |
1.796 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
pyrimidine-containing compound biosynthetic process |
2.853e-10 |
1.921 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
pyrimidine-containing compound catabolic process |
0 |
2.222 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
dicarboxylic acid metabolic process |
0.001556 |
1.921 |
Highly Informative |
INHERITED FROM: dicarboxylic acid biosynthetic process || glutamate metabolic process || glutamate biosynthetic process |
| Molecular Function (MF) |
polyprenyltransferase activity |
7.49e-15 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
catalytic activity |
8.613e-14 |
0.2686 |
-- |
DIRECT |
| Molecular Function (MF) |
(S)-2-hydroxy-acid oxidase activity |
0 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
dihydroorotate dehydrogenase activity |
0 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
lactate dehydrogenase activity |
6.912e-05 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
FMN binding |
0 |
2.377 |
-- |
DIRECT |
| Molecular Function (MF) |
oxidoreductase activity, acting on the CH-CH group of donors |
0 |
1.9 |
-- |
DIRECT |
| Molecular Function (MF) |
12-oxophytodienoate reductase activity |
0.0001601 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as accepto |
0.000865 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor |
3.027e-14 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
tRNA dihydrouridine synthase activity |
9.399e-09 |
2.679 |
-- |
DIRECT |
| Molecular Function (MF) |
coenzyme binding |
2.149e-12 |
1.724 |
-- |
DIRECT |
| Molecular Function (MF) |
nucleoside phosphate binding |
0.0004107 |
1.448 |
-- |
DIRECT |
| Molecular Function (MF) |
molecular_function |
1 |
0 |
-- |
INHERITED FROM: oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as accepto || transferase activity, transferring alkyl or aryl (other than methyl) groups || FMN binding || polyprenyltransferase activity || glutamate synthase activity || coenzyme binding || lactate dehydrogenase activity || dihydropyrimidine dehydrogenase (NADP+) activity || nucleotide binding || catalytic activity || tRNA dihydrouridine synthase activity || 12-oxophytodienoate reductase activity || oxidoreductase activity, acting on the CH-CH group of donors || (S)-2-hydroxy-acid oxidase activity || oxidoreductase activity || oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor || prenyltransferase activity || nucleoside phosphate binding || dihydroorotate dehydrogenase activity || cofactor binding |
| Molecular Function (MF) |
oxidoreductase activity, acting on the CH-NH2 group of donors |
0.005641 |
2.377 |
-- |
INHERITED FROM: glutamate synthase activity |
| Molecular Function (MF) |
small molecule binding |
0.001036 |
1.317 |
-- |
INHERITED FROM: FMN binding || nucleotide binding |
| Molecular Function (MF) |
ribonucleotide binding |
0.5834 |
1.599 |
-- |
INHERITED FROM: FMN binding |
| Molecular Function (MF) |
ion binding |
0.4467 |
0.8334 |
-- |
INHERITED FROM: FMN binding |
| Molecular Function (MF) |
binding |
1 |
0.3952 |
Least Informative |
INHERITED FROM: coenzyme binding || nucleoside phosphate binding || FMN binding || nucleotide binding || cofactor binding |
| Molecular Function (MF) |
transferase activity |
1 |
0.7491 |
Least Informative |
INHERITED FROM: prenyltransferase activity || polyprenyltransferase activity || transferase activity, transferring alkyl or aryl (other than methyl) groups |
| Molecular Function (MF) |
oxidoreductase activity |
0 |
0.9883 |
Moderately Informative |
DIRECT |
| Molecular Function (MF) |
anion binding |
0.07604 |
1.076 |
Moderately Informative |
INHERITED FROM: FMN binding |
| Molecular Function (MF) |
organic cyclic compound binding |
0.725 |
0.846 |
Moderately Informative |
INHERITED FROM: nucleotide binding || nucleoside phosphate binding || FMN binding |
| Molecular Function (MF) |
heterocyclic compound binding |
0.8961 |
0.8932 |
Moderately Informative |
INHERITED FROM: nucleotide binding || nucleoside phosphate binding || FMN binding |
| Molecular Function (MF) |
nucleotide binding |
0.0004107 |
1.448 |
Informative |
DIRECT |
| Molecular Function (MF) |
transferase activity, transferring alkyl or aryl (other than methyl) groups |
0.0002604 |
1.532 |
Informative |
DIRECT |
| Molecular Function (MF) |
cofactor binding |
4.172e-10 |
1.474 |
Informative |
DIRECT |
| Molecular Function (MF) |
oxidoreductase activity, acting on CH-OH group of donors |
1 |
1.724 |
Informative |
INHERITED FROM: oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor || (S)-2-hydroxy-acid oxidase activity || lactate dehydrogenase activity |
| Molecular Function (MF) |
prenyltransferase activity |
1.716e-07 |
2.076 |
Highly Informative |
DIRECT |
| Molecular Function (MF) |
oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor |
0.2291 |
2.076 |
Highly Informative |
INHERITED FROM: 12-oxophytodienoate reductase activity || dihydropyrimidine dehydrogenase (NADP+) activity |
| Cellular Component (CC) |
mitochondrion |
4.795e-05 |
0.7422 |
-- |
DIRECT |
| Cellular Component (CC) |
cellular_component |
1 |
0 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
intracellular |
0.7632 |
0.1266 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
cell |
1 |
0.08068 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
cytoplasm |
0.006947 |
0.2515 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
organelle |
1 |
0.1836 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
membrane-bounded organelle |
0.5392 |
0.2912 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
intracellular organelle |
1 |
0.1875 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
intracellular part |
0.7304 |
0.1266 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
cell part |
1 |
0.08068 |
-- |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
intracellular membrane-bounded organelle |
0.5264 |
0.2961 |
Least Informative |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
cytoplasmic part |
0.00299 |
0.2605 |
Least Informative |
INHERITED FROM: microbody || mitochondrion |
| Cellular Component (CC) |
microbody |
1.494e-14 |
1.587 |
Informative |
DIRECT |
0
