SUPERFAMILY 1.75 HMM library and genome assignments server


RNI-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [ 52046] (3)
Superfamily:   RNI-like [ 52047] (3)
Families:   28-residue LRR [ 52048] (2)
  Rna1p (RanGAP1), N-terminal domain [ 52052]
  Cyclin A/CDK2-associated p19, Skp2 [ 52055]


Superfamily statistics
Genomes (820) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 63,448 57,411 12
Proteins 57,316 52,483 9


Functional annotation
General category Processes_EC
Detailed category Cell adhesion

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular macromolecule metabolic process0.91Least InformativeInherited
Biological Process (BP)response to stimulus10.1877Least InformativeInherited
Biological Process (BP)protein metabolic process0.55320.438Least InformativeInherited
Biological Process (BP)cellular catabolic process0.28330.1448Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.14571Moderately InformativeInherited
Biological Process (BP)cellular protein modification process0.54630.3639Moderately InformativeInherited
Biological Process (BP)protein catabolic process4.06e-050InformativeDirect
Biological Process (BP)proteolysis0.00015712.931e-10InformativeDirect
Biological Process (BP)cellular macromolecule catabolic process0.00040265.161e-11InformativeDirect
Biological Process (BP)response to light stimulus0.0069430.01436InformativeInherited
Biological Process (BP)protein modification by small protein conjugation or removal0.0044272.8e-14InformativeInherited
Biological Process (BP)ubiquitin-dependent protein catabolic process4.061e-060Highly InformativeDirect
Biological Process (BP)regulation of circadian rhythm8.126e-068.519e-08Highly InformativeDirect
Biological Process (BP)protein ubiquitination0.00035120Highly InformativeDirect
Molecular Function (MF)ligase activity, forming carbon-nitrogen bonds0.0001721.342e-12InformativeDirect
Molecular Function (MF)small conjugating protein ligase activity3.564e-050Highly InformativeDirect
Cellular Component (CC)protein complex10.001031Least InformativeInherited
Cellular Component (CC)ubiquitin ligase complex0.00037040InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0.1877 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.438 Least Informative Inherited
Biological Process (BP) response to organic substance 0 Moderately Informative Direct
Biological Process (BP) multi-organism process 0 Moderately Informative Direct
Biological Process (BP) response to endogenous stimulus 3.468e-14 Moderately Informative Direct
Biological Process (BP) cellular response to chemical stimulus 8.699e-08 Moderately Informative Direct
Biological Process (BP) immune system process 2.04e-06 Moderately Informative Direct
Biological Process (BP) signal transduction 3.884e-06 Moderately Informative Direct
Biological Process (BP) positive regulation of response to stimulus 0.0008041 Moderately Informative Direct
Biological Process (BP) response to oxygen-containing compound 0.9214 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.3639 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of localization 0.9336 Moderately Informative Inherited
Biological Process (BP) positive regulation of molecular function 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 0.8243 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) reproduction 0.3401 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.1448 Moderately Informative Inherited
Biological Process (BP) regulation of catalytic activity 0.6101 Moderately Informative Inherited
Biological Process (BP) regulation of programmed cell death 0.3866 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.4306 Moderately Informative Inherited
Biological Process (BP) regulation of phosphate metabolic process 0.9835 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of signal transduction 1 Moderately Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) organ development 0.8686 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.3035 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) protein catabolic process 0 Informative Direct
Biological Process (BP) proteolysis 2.931e-10 Informative Direct
Biological Process (BP) cellular macromolecule catabolic process 5.161e-11 Informative Direct
Biological Process (BP) protein modification by small protein conjugation or removal 2.8e-14 Informative Direct
Biological Process (BP) defense response 0 Informative Direct
Biological Process (BP) response to other organism 5.618e-15 Informative Direct
Biological Process (BP) regulation of defense response 7.377e-15 Informative Direct
Biological Process (BP) regulation of cytokine production 1.439e-14 Informative Direct
Biological Process (BP) reproductive system development 1.132e-10 Informative Direct
Biological Process (BP) immune response 1.721e-09 Informative Direct
Biological Process (BP) regulation of immune response 4.17e-09 Informative Direct
Biological Process (BP) cellular response to endogenous stimulus 8.275e-09 Informative Direct
Biological Process (BP) regulation of establishment of protein localization 7.379e-07 Informative Direct
Biological Process (BP) positive regulation of immune system process 9.022e-07 Informative Direct
Biological Process (BP) response to hormone stimulus 1.207e-05 Informative Direct
Biological Process (BP) positive regulation of multicellular organismal process 1.466e-05 Informative Direct
Biological Process (BP) developmental process involved in reproduction 2.623e-05 Informative Direct
Biological Process (BP) positive regulation of transport 0.0004991 Informative Direct
Biological Process (BP) regulation of peptidase activity 0.00219 Informative Inherited
Biological Process (BP) regulation of cellular component movement 0.3057 Informative Inherited
Biological Process (BP) regulation of locomotion 0.6694 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.01427 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.9894 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.5111 Informative Inherited
Biological Process (BP) response to organonitrogen compound 1 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.7671 Informative Inherited
Biological Process (BP) positive regulation of cellular component organization 1 Informative Inherited
Biological Process (BP) regulation of secretion 0.006897 Informative Inherited
Biological Process (BP) growth 1 Informative Inherited
Biological Process (BP) epithelium development 1 Informative Inherited
Biological Process (BP) regulation of growth 0.496 Informative Inherited
Biological Process (BP) apoptotic process 1 Informative Inherited
Biological Process (BP) response to light stimulus 0.01436 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 1 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.05667 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.0607 Informative Inherited
Biological Process (BP) regulation of intracellular protein kinase cascade 0.01619 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 0.2997 Informative Inherited
Biological Process (BP) response to lipid 0.09149 Informative Inherited
Biological Process (BP) DNA metabolic process 1 Informative Inherited
Biological Process (BP) response to DNA damage stimulus 1 Informative Inherited
Biological Process (BP) positive regulation of hydrolase activity 0.3777 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 1 Informative Inherited
Biological Process (BP) cellular component morphogenesis 1 Informative Inherited
Biological Process (BP) regulation of immune effector process 0.7506 Informative Inherited
Biological Process (BP) intracellular signal transduction 1 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 0.02039 Informative Inherited
Biological Process (BP) immune effector process 0.6314 Informative Inherited
Biological Process (BP) leukocyte activation 1 Informative Inherited
Biological Process (BP) cell cycle process 0.1677 Informative Inherited
Biological Process (BP) mitotic cell cycle 0.005463 Informative Inherited
Biological Process (BP) ubiquitin-dependent protein catabolic process 0 Highly Informative Direct
Biological Process (BP) regulation of circadian rhythm 8.519e-08 Highly Informative Direct
Biological Process (BP) protein ubiquitination 0 Highly Informative Direct
Biological Process (BP) post-embryonic organ development 0 Highly Informative Direct
Biological Process (BP) hormone-mediated signaling pathway 0 Highly Informative Direct
Biological Process (BP) positive regulation of protein secretion 1.99e-11 Highly Informative Direct
Biological Process (BP) positive regulation of cytokine production 5.131e-11 Highly Informative Direct
Biological Process (BP) post-embryonic development 1.093e-10 Highly Informative Direct
Biological Process (BP) regulation of toll-like receptor signaling pathway 6.331e-10 Highly Informative Direct
Biological Process (BP) positive regulation of defense response 5.99e-09 Highly Informative Direct
Biological Process (BP) regulation of innate immune response 5.253e-08 Highly Informative Direct
Biological Process (BP) cellular response to biotic stimulus 1.208e-06 Highly Informative Direct
Biological Process (BP) regulation of cytokine biosynthetic process 1.216e-06 Highly Informative Direct
Biological Process (BP) myeloid leukocyte activation 1.566e-06 Highly Informative Direct
Biological Process (BP) mitotic cell cycle phase transition 2.377e-06 Highly Informative Direct
Biological Process (BP) positive regulation of sequence-specific DNA binding transcription factor activity 5.198e-06 Highly Informative Direct
Biological Process (BP) regulation of protein ubiquitination 1.068e-05 Highly Informative Direct
Biological Process (BP) regulation of cysteine-type endopeptidase activity involved in apoptotic process 1.076e-05 Highly Informative Direct
Biological Process (BP) negative regulation of sequence-specific DNA binding transcription factor activity 1.114e-05 Highly Informative Direct
Biological Process (BP) regulation of production of molecular mediator of immune response 6.219e-05 Highly Informative Direct
Biological Process (BP) regulation of cytokine secretion 0.0001638 Highly Informative Direct
Biological Process (BP) response to lipopolysaccharide 0.0003824 Highly Informative Direct
Biological Process (BP) negative regulation of multicellular organismal process 0.0006518 Highly Informative Direct
Biological Process (BP) regulation of behavior 0.6537 Highly Informative Inherited
Biological Process (BP) cellular response to steroid hormone stimulus 0.001087 Highly Informative Inherited
Biological Process (BP) cellular response to peptide 1 Highly Informative Inherited
Biological Process (BP) regulation of endocytosis 0.2442 Highly Informative Inherited
Biological Process (BP) regulation of interleukin-1 beta production 0.7276 Highly Informative Inherited
Biological Process (BP) cell growth 0.1124 Highly Informative Inherited
Biological Process (BP) developmental growth 0.9678 Highly Informative Inherited
Biological Process (BP) developmental maturation 0.3032 Highly Informative Inherited
Biological Process (BP) epidermal cell differentiation 1 Highly Informative Inherited
Biological Process (BP) DNA replication 0.458 Highly Informative Inherited
Biological Process (BP) regulation of multi-organism process 0.06494 Highly Informative Inherited
Biological Process (BP) response to UV 0.6568 Highly Informative Inherited
Biological Process (BP) positive regulation of endopeptidase activity 0.03186 Highly Informative Inherited
Biological Process (BP) negative regulation of immune system process 0.01993 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to stress 0.05045 Highly Informative Inherited
Biological Process (BP) positive regulation of MAPK cascade 0.7319 Highly Informative Inherited
Biological Process (BP) proteasomal protein catabolic process 0.0493 Highly Informative Inherited
Biological Process (BP) regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 0.00942 Highly Informative Inherited
Biological Process (BP) ossification 0.001721 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.1995 Highly Informative Inherited
Biological Process (BP) positive regulation of leukocyte mediated immunity 0.21 Highly Informative Inherited
Biological Process (BP) regulation of adaptive immune response based on somatic recombination of immune receptors built from 0.06214 Highly Informative Inherited
Biological Process (BP) regulation of lymphocyte mediated immunity 0.5909 Highly Informative Inherited
Biological Process (BP) negative regulation of response to external stimulus 0.04127 Highly Informative Inherited
Biological Process (BP) regulation of humoral immune response 0.3192 Highly Informative Inherited
Biological Process (BP) immune response-activating signal transduction 0.07227 Highly Informative Inherited
Biological Process (BP) positive regulation of adaptive immune response 0.5019 Highly Informative Inherited
Biological Process (BP) leukocyte mediated immunity 0.8404 Highly Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) anion binding 0.0001794 Moderately Informative Direct
Molecular Function (MF) enzyme regulator activity 1 Moderately Informative Inherited
Molecular Function (MF) cation binding 1 Moderately Informative Inherited
Molecular Function (MF) ligase activity, forming carbon-nitrogen bonds 1.342e-12 Informative Direct
Molecular Function (MF) amide binding 2.56e-06 Informative Direct
Molecular Function (MF) lipid binding 0.5883 Informative Inherited
Molecular Function (MF) carbohydrate derivative binding 0.1574 Informative Inherited
Molecular Function (MF) cytoskeletal protein binding 0.08501 Informative Inherited
Molecular Function (MF) transition metal ion binding 1 Informative Inherited
Molecular Function (MF) receptor activity 0.372 Informative Inherited
Molecular Function (MF) molecular transducer activity 0.5621 Informative Inherited
Molecular Function (MF) small conjugating protein ligase activity 0 Highly Informative Direct
Molecular Function (MF) alcohol binding 0 Highly Informative Direct
Molecular Function (MF) peptide binding 1.128e-06 Highly Informative Direct
Molecular Function (MF) hormone binding 1.207e-05 Highly Informative Direct
Molecular Function (MF) cysteine-type endopeptidase regulator activity involved in apoptotic process 3.796e-05 Highly Informative Direct
Molecular Function (MF) iron ion binding 0.0002462 Highly Informative Direct
Cellular Component (CC) protein complex 0.001031 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intrinsic to membrane 1 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) nuclear part 1 Moderately Informative Inherited
Cellular Component (CC) cytoskeleton 1 Moderately Informative Inherited
Cellular Component (CC) ubiquitin ligase complex 0 Informative Direct
Cellular Component (CC) integral to membrane 1 Informative Inherited
Cellular Component (CC) chromosome 1 Informative Inherited
Cellular Component (CC) contractile fiber part 0.5869 Informative Inherited
Cellular Component (CC) nucleoplasm part 1 Informative Inherited
Cellular Component (CC) actin cytoskeleton 0.2593 Informative Inherited
Cellular Component (CC) cullin-RING ubiquitin ligase complex 8.256e-06 Highly Informative Direct
Cellular Component (CC) receptor complex 0.02208 Highly Informative Inherited
Cellular Component (CC) nuclear chromosome part 0.5724 Highly Informative Inherited
Cellular Component (CC) cell body 0.3209 Highly Informative Inherited
Cellular Component (CC) sarcomere 0.9866 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Oxidoreductases0.4543Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or red1.75e-08Moderately InformativeDirect
Enzyme Commission (EC)With 2-oxoglutarate as one donor, and incorporatio2.328e-15Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)gastrointestinal system disease0.01321Moderately InformativeInherited
Disease Ontology (DO)syndrome0.2788Moderately InformativeInherited
Disease Ontology (DO)inflammatory bowel disease0.0001431InformativeDirect
Disease Ontology (DO)allergic rhinitis0.0003748InformativeDirect
Disease Ontology (DO)Crohn's disease7.36e-06Highly InformativeDirect
Disease Ontology (DO)irritable bowel syndrome0.0002037Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0.3526Least InformativeInherited
Phenotypic Abnormality (PA)Abnormal joint morphology0.1638Moderately InformativeInherited
Phenotypic Abnormality (PA)Arthralgia0.0003215Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0.08265Least InformativeInherited
Mammalian Phenotype (MP)abnormal immune serum protein physiology0.0002218Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal inflammatory response0.1736Moderately InformativeInherited
Mammalian Phenotype (MP)digestive/alimentary phenotype0.2578Moderately InformativeInherited
Mammalian Phenotype (MP)increased susceptibility to infection0.00054InformativeDirect
Mammalian Phenotype (MP)abnormal digestive system physiology0.05466InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin secretion0.05973InformativeInherited
Mammalian Phenotype (MP)abnormal interferon secretion0.9597InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin-1 beta secretion5.543e-08Highly InformativeDirect
Mammalian Phenotype (MP)decreased interleukin-12b secretion3.293e-05Highly InformativeDirect
Mammalian Phenotype (MP)colitis0.0001018Highly InformativeDirect
Mammalian Phenotype (MP)abnormal tumor necrosis factor secretion0.4952Highly InformativeInherited
Mammalian Phenotype (MP)decreased susceptibility to infection0.5203Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0.9966Least InformativeInherited
Worm Phenotype (WP)protein aggregation variant0.5472Moderately InformativeInherited
Worm Phenotype (WP)protein aggregation induced paralysis0.0003916InformativeDirect
Worm Phenotype (WP)resistant to protein aggregation induced paralysis0.0001317Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)microsporophyll1Least InformativeInherited
Plant ANatomical entity (PAN)flower1Least InformativeInherited
Plant ANatomical entity (PAN)collective phyllome structure1Least InformativeInherited
Plant ANatomical entity (PAN)sporangium1Least InformativeInherited
Plant ANatomical entity (PAN)cardinal part of multi-tissue plant structure1Least InformativeInherited
Plant ANatomical entity (PAN)anther8.324e-05Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases0.5634Least InformativeInherited
Enzyme Commission (EC)Lyases0.7476Least InformativeInherited
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect
Enzyme Commission (EC)Non-specific serine/threonine protein kinase0InformativeDirect
Enzyme Commission (EC)Acting on paired donors, with incorporation or reduction of molecular oxygen5.424e-08InformativeDirect
Enzyme Commission (EC)Protein-tyrosine kinases0.01103InformativeInherited
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.61e-15Highly InformativeDirect
Enzyme Commission (EC)Adenylate cyclase8.009e-11Highly InformativeDirect
Enzyme Commission (EC)Receptor protein-tyrosine kinase4.527e-06Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processApoptosis2.158e-12Moderately InformativeDirect
Biological processDifferentiation0.0001205Moderately InformativeDirect
Biological processCell cycle0.3629Moderately InformativeInherited
Biological processInflammatory response0InformativeDirect
Biological processInnate immunity0InformativeDirect
Biological processPlant defense0InformativeDirect
Biological processUbl conjugation pathway0InformativeDirect
Biological processMitosis3.084e-06InformativeDirect
Biological processBiological rhythms8.63e-06InformativeDirect
Cellular componentNucleus5.713e-08Least InformativeDirect
Cellular componentCytoplasm1Least InformativeInherited
Cellular componentCytoskeleton1.524e-11Moderately InformativeDirect
Cellular componentCell projection0.0104Moderately InformativeInherited
Cellular componentCilium0.008214Highly InformativeInherited
DomainRepeat0Least InformativeDirect
DomainLeucine-rich repeat0InformativeDirect
Molecular functionActin-binding1.149e-09InformativeDirect
Post-translational modificationTransferase1Least InformativeInherited
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationDevelopmental protein4.082e-07Moderately InformativeDirect
Post-translational modificationKinase0.006848Moderately InformativeInherited
Post-translational modificationOxidoreductase1Moderately InformativeInherited
Post-translational modificationSerine/threonine-protein kinase0InformativeDirect
Post-translational modificationGTPase activation3.585e-08InformativeDirect
Post-translational modificationDioxygenase0.0009169Highly InformativeDirect
Post-translational modificationPhosphoprotein1.374e-06Least InformativeDirect
Post-translational modificationGlycoprotein2.27e-06Least InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)biopolymer metabolism0Least InformativeDirect
UniPathway (UP)protein ubiquitination0Moderately InformativeDirect

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a RNI-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the RNI-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]