SUPERFAMILY 1.75 HMM library and genome assignments server

  Home > SCOP hierarchy > Ribosomal proteins L15p and L18e superfamily


Ribosomal proteins L15p and L18e superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Ribosomal proteins L15p and L18e [ 52079]
Superfamily:   Ribosomal proteins L15p and L18e [ 52080]
Families:   Ribosomal proteins L15p and L18e [ 52081] (2)

Superfamily statistics
Genomes (2,481) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 4,288 9,360 12
Proteins 4,278 9,351 12

 Functional annotation
General category Information
Detailed category Translation

Document: Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular macromolecule metabolic process0.004630.0005139Least InformativeInherited
Biological Process (BP)protein metabolic process0.0012520.0001165Least InformativeInherited
Biological Process (BP)biosynthetic process0.003246.54e-09Least InformativeInherited
Biological Process (BP)gene expression7.829e-062.389e-12Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process5.338e-061.771e-10Moderately InformativeDirect
Molecular Function (MF)structural molecule activity1.207e-080Moderately InformativeDirect
Molecular Function (MF)structural constituent of ribosome5.701e-100InformativeDirect
Cellular Component (CC)intracellular non-membrane-bounded organelle2.623e-064.52e-10Least InformativeDirect
Cellular Component (CC)cytoplasmic part2.979e-051.67e-13Least InformativeDirect
Cellular Component (CC)intracellular organelle part0.0079710.0005057Least InformativeInherited
Cellular Component (CC)ribonucleoprotein complex2.496e-100Moderately InformativeDirect
Cellular Component (CC)cytosol0.058470.04721Moderately InformativeInherited
Cellular Component (CC)large ribosomal subunit1.608e-130InformativeDirect
Cellular Component (CC)cytosolic ribosome0.30270.2565InformativeInherited
Cellular Component (CC)cytosolic large ribosomal subunit0.00055420.0005975Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 6.54e-09 Least Informative Direct
Biological Process (BP) protein metabolic process 0.0001165 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0005139 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.8797 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.9697 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.8456 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.9335 Least Informative Inherited
Biological Process (BP) gene expression 2.389e-12 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 1.771e-10 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.1918 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 0.1863 Moderately Informative Inherited
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.2069 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 0.2808 Moderately Informative Inherited
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Molecular Function (MF) structural constituent of ribosome 0 Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 4.52e-10 Least Informative Direct
Cellular Component (CC) cytoplasmic part 1.67e-13 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0005057 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) ribonucleoprotein complex 0 Moderately Informative Direct
Cellular Component (CC) cytosol 0.04721 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0.8772 Moderately Informative Inherited
Cellular Component (CC) mitochondrial part 0.01285 Moderately Informative Inherited
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.2565 Informative Inherited
Cellular Component (CC) mitochondrial ribosome 2.876e-05 Highly Informative Direct
Cellular Component (CC) cytosolic large ribosomal subunit 0.0005975 Highly Informative Direct

Document: GO annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)male genitalia0Least InformativeDirect
Xenopus ANatomical entity (XAN)cell0Least InformativeDirect
Xenopus ANatomical entity (XAN)portion of tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect
Xenopus ANatomical entity (XAN)ectoderm0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)ovary0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)gamete0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Molecular functionRNA-binding0Moderately InformativeDirect
Molecular functionrRNA-binding0InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationHydroxylation7.814e-06InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal proteins L15p and L18e domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the Ribosomal proteins L15p and L18e superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.