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Toll/Interleukin receptor TIR domain superfamily
SCOP classification
Superfamily statistics
Functional annotation
| General category | Regulation |
| Detailed category | Signal transduction |
Function annotation of SCOP domain superfamilies
InterPro annotation
| Cross references | IPR000157 SSF52200 Protein matches |
| Abstract | In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral
polarity in the embryo. In addition, members of the Toll family play a key
role in innate antibacterial and antifungal immunity in insects as well as in
mammals. These proteins are type-I transmembrane receptors that share an
intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the
Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors
(LTRs) and IL-1R is not restricted to sequence homology since these proteins
also share a similar signaling pathway. They both induce the activation of a
Rel type transcription factor via an adaptor protein and a protein kinase [ 8621445].
Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains
a TIR domain associated to a DEATH domain (see ) [ 8621445, 9374458, 10679407]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defense [ 9868361]. As MyD88, these proteins are cytoplasmic.
Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed
the presence of three highly conserved regions among the different members of
the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W
surrounded by basic residues). It has been proposed that boxes 1 and 2 are
involved in the binding of proteins involved in signaling, whereas box 3 is
primarily involved in directing localization of receptor, perhaps through
interactions with cytoskeletal elements [ 10671496]. |
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 2 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Toll/Interleukin receptor TIR domain domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 2 hidden Markov models representing the Toll/Interleukin receptor TIR domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Internal database links ]
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