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Toll/Interleukin receptor TIR domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Flavodoxin-like [ 52171] (15)
Superfamily:   Toll/Interleukin receptor TIR domain [ 52200]
Families:   Toll/Interleukin receptor TIR domain [ 52201] (2)


Superfamily statistics
Genomes (781) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 9,716 31,743 4
Proteins 9,285 30,843 4


Functional annotation
General category Regulation
Detailed category Signal transduction

Document:
Function annotation of SCOP domain superfamilies

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.9127Least InformativeInherited
Disease Ontology (DO)organ system cancer0.9736Least InformativeInherited
Disease Ontology (DO)disease by infectious agent0.0000005675Moderately InformativeDirect
Disease Ontology (DO)gastrointestinal system disease0.005054Moderately InformativeInherited
Disease Ontology (DO)skin disease0.005558Moderately InformativeInherited
Disease Ontology (DO)syndrome0.01975Moderately InformativeInherited
Disease Ontology (DO)hematologic cancer0.181Moderately InformativeInherited
Disease Ontology (DO)connective tissue disease0.334Moderately InformativeInherited
Disease Ontology (DO)lower respiratory tract disease0.6509Moderately InformativeInherited
Disease Ontology (DO)asthma0.000000000003293InformativeDirect
Disease Ontology (DO)allergic rhinitis0.000009089InformativeDirect
Disease Ontology (DO)liver disease0.0000735InformativeDirect
Disease Ontology (DO)inflammatory bowel disease0.0002562InformativeDirect
Disease Ontology (DO)primary bacterial infectious disease0.0006033InformativeDirect
Disease Ontology (DO)muscle tissue disease0.005996InformativeInherited
Disease Ontology (DO)lymphoma0.01516InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type IV disease0.01718InformativeInherited
Disease Ontology (DO)interstitial lung disease0.2215InformativeInherited
Disease Ontology (DO)parasitic protozoa infectious disease0.4462InformativeInherited
Disease Ontology (DO)opportunistic mycosis0.00000000001429Highly InformativeDirect
Disease Ontology (DO)filariasis0.00000000002269Highly InformativeDirect
Disease Ontology (DO)dermatomyositis0.000002767Highly InformativeDirect
Disease Ontology (DO)Chagas disease0.000005492Highly InformativeDirect
Disease Ontology (DO)mycosis fungoides0.00006146Highly InformativeDirect
Disease Ontology (DO)sarcoidosis0.00007707Highly InformativeDirect
Disease Ontology (DO)meningitis0.00009587Highly InformativeDirect
Disease Ontology (DO)atopic dermatitis0.0006442Highly InformativeDirect
Disease Ontology (DO)irritable bowel syndrome0.0006536Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the head0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the eye0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormal oral cavity morphology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the ear0Moderately InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0.00000000616Least InformativeDirect
Mammalian Phenotype (MP)hematopoietic system phenotype0.000002639Least InformativeDirect
Mammalian Phenotype (MP)cardiovascular system phenotype0.3203Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.3314Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.4376Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.6216Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.725Least InformativeInherited
Mammalian Phenotype (MP)abnormal immune serum protein physiology0.000005676Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal protein level0.0000194Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal induced morbidity/mortality0.00005645Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal renal/urinary system physiology0.003349Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.01366Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell physiology0.03016Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.06382Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.1344Moderately InformativeInherited
Mammalian Phenotype (MP)respiratory system phenotype0.1623Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte physiology0.2509Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal eye morphology0.4575Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal inflammatory response0.4618Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal mononuclear cell morphology0.7194Moderately InformativeInherited
Mammalian Phenotype (MP)increased susceptibility to infection0.00000000007238InformativeDirect
Mammalian Phenotype (MP)abnormal intestine physiology0.00003206InformativeDirect
Mammalian Phenotype (MP)autoimmune response0.0001885InformativeDirect
Mammalian Phenotype (MP)abnormal kidney physiology0.0001885InformativeDirect
Mammalian Phenotype (MP)abnormal macrophage physiology0.0002576InformativeDirect
Mammalian Phenotype (MP)abnormal circulating cytokine level0.0007441InformativeDirect
Mammalian Phenotype (MP)abnormal response to injury0.001946InformativeInherited
Mammalian Phenotype (MP)abnormal humoral immune response0.02496InformativeInherited
Mammalian Phenotype (MP)abnormal gas homeostasis0.03204InformativeInherited
Mammalian Phenotype (MP)abnormal eye development0.03833InformativeInherited
Mammalian Phenotype (MP)abnormal respiratory function0.09282InformativeInherited
Mammalian Phenotype (MP)joint inflammation0.1172InformativeInherited
Mammalian Phenotype (MP)abnormal mature B cell morphology0.1314InformativeInherited
Mammalian Phenotype (MP)hemorrhage0.1811InformativeInherited
Mammalian Phenotype (MP)abnormal interferon level0.1912InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin secretion0.1937InformativeInherited
Mammalian Phenotype (MP)abnormal blood vessel physiology0.2918InformativeInherited
Mammalian Phenotype (MP)decreased cell proliferation0.4InformativeInherited
Mammalian Phenotype (MP)increased leukocyte cell number0.4594InformativeInherited
Mammalian Phenotype (MP)abnormal interleukin level0.4678InformativeInherited
Mammalian Phenotype (MP)abnormal T cell physiology0.6505InformativeInherited
Mammalian Phenotype (MP)abnormal natural killer cell mediated cytotoxicity0.7556InformativeInherited
Mammalian Phenotype (MP)abnormal interferon secretion0.9199InformativeInherited
Mammalian Phenotype (MP)abnormal B cell proliferation0.9723InformativeInherited
Mammalian Phenotype (MP)decreased interleukin-12b secretion0Highly InformativeDirect
Mammalian Phenotype (MP)decreased macrophage cytokine production0.0000000000395Highly InformativeDirect
Mammalian Phenotype (MP)decreased immunoglobulin level0.000000001158Highly InformativeDirect
Mammalian Phenotype (MP)abnormal interleukin-1 beta secretion0.000004334Highly InformativeDirect
Mammalian Phenotype (MP)abnormal glial cell physiology0.00003354Highly InformativeDirect
Mammalian Phenotype (MP)abnormal airway responsiveness0.0002302Highly InformativeDirect
Mammalian Phenotype (MP)abnormal B-1 B cell number0.0003108Highly InformativeDirect
Mammalian Phenotype (MP)decreased B cell proliferation0.0003226Highly InformativeDirect
Mammalian Phenotype (MP)decreased interleukin-10 secretion0.0003486Highly InformativeDirect
Mammalian Phenotype (MP)altered susceptibility to kidney reperfusion injury0.0004972Highly InformativeDirect
Mammalian Phenotype (MP)abnormal dendritic cell physiology0.0005483Highly InformativeDirect
Mammalian Phenotype (MP)abnormal enterocyte physiology0.0007792Highly InformativeDirect
Mammalian Phenotype (MP)abnormal vascular wound healing0.0008176Highly InformativeDirect
Mammalian Phenotype (MP)gastrointestinal hemorrhage0.002523Highly InformativeInherited
Mammalian Phenotype (MP)abnormal nitric oxide homeostasis0.003669Highly InformativeInherited
Mammalian Phenotype (MP)decreased inflammatory response0.005618Highly InformativeInherited
Mammalian Phenotype (MP)increased B cell number0.01465Highly InformativeInherited
Mammalian Phenotype (MP)decreased susceptibility to injury0.02864Highly InformativeInherited
Mammalian Phenotype (MP)abnormal tumor necrosis factor secretion0.03465Highly InformativeInherited
Mammalian Phenotype (MP)abnormal fat cell morphology0.05147Highly InformativeInherited
Mammalian Phenotype (MP)abnormal immune organ physiology0.1127Highly InformativeInherited
Mammalian Phenotype (MP)abnormal acute inflammation0.2631Highly InformativeInherited

Document: MP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0Least InformativeDirect
Fly Anatomy (FA)multi-tissue structure0.09777Least InformativeInherited
Fly Anatomy (FA)organ system subdivision0.1971Least InformativeInherited
Fly Anatomy (FA)nervous system0.323Least InformativeInherited
Fly Anatomy (FA)late embryo0.01997Moderately InformativeInherited
Fly Anatomy (FA)ganglion0.02025Moderately InformativeInherited
Fly Anatomy (FA)central nervous system0.0444Moderately InformativeInherited
Fly Anatomy (FA)ventral nerve cord0.0007116InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

InterPro annotation
Cross references IPR000157 SSF52200 Protein matches
Abstract

In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signaling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase [PubMed8621445]. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see ) [PubMed8621445, PubMed9374458, PubMed10679407]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defense [PubMed9868361]. As MyD88, these proteins are cytoplasmic.

Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signaling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [PubMed10671496].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Toll/Interleukin receptor TIR domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Toll/Interleukin receptor TIR domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Internal database links ]