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Ribosomal protein S2 superfamily
SCOP classification
Superfamily statistics
Functional annotation
| General category | Information |
| Detailed category | Translation |
Document: Function annotation of SCOP domain superfamilies
Gene Ontology (high-quality) (show details)
Highlighted in gray are those with either FDR_singleton>0.001 or FDR_all>0.001
| GO term | FDR (singleton) | FDR (all) | IC level | SDFO level | Annotation (direct or inherited) |
| Biological Process (BP) | ribosomal small subunit assembly | 1.503e-13 | 1.061e-12 | 2.699 | -- | DIRECT |
| Biological Process (BP) | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic | 3.099e-15 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | maturation of 5.8S rRNA | 2.893e-14 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.902e-13 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | cleavage involved in rRNA processing | 1.134e-13 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | endonucleolytic cleavage involved in rRNA processing | 1.195e-14 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.09e-15 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | RNA localization | 9.691e-06 | 5.471e-13 | 1.921 | -- | DIRECT |
| Biological Process (BP) | rRNA export from nucleus | 5.208e-13 | 0 | 2.398 | -- | DIRECT |
| Biological Process (BP) | translation | 2.651e-11 | 0 | 1.222 | -- | DIRECT |
| Biological Process (BP) | transport | 2.773e-06 | 3.21e-09 | 0.7747 | -- | DIRECT |
| Biological Process (BP) | macromolecule biosynthetic process | 6.014e-08 | 0 | 0.8861 | -- | DIRECT |
| Biological Process (BP) | nucleobase-containing compound transport | 2.399e-05 | 3.805e-13 | 1.854 | -- | DIRECT |
| Biological Process (BP) | rRNA metabolic process | 2.349e-09 | 0 | 1.796 | -- | DIRECT |
| Biological Process (BP) | ribonucleoprotein complex assembly | 1.736e-11 | 1.922e-09 | 2.222 | -- | DIRECT |
| Biological Process (BP) | maturation of SSU-rRNA | 1.946e-12 | 1.124e-11 | 2.699 | -- | DIRECT |
| Biological Process (BP) | rRNA 3'-end processing | 3.099e-15 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | ncRNA metabolic process | 1.023e-07 | 1.291e-06 | 1.444 | -- | DIRECT |
| Biological Process (BP) | ribosome biogenesis | 7.797e-09 | 0 | 1.699 | -- | DIRECT |
| Biological Process (BP) | ribosome assembly | 7.902e-13 | 5.43e-14 | 2.398 | -- | DIRECT |
| Biological Process (BP) | ribosomal small subunit biogenesis | 8.981e-12 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | macromolecule metabolic process | 0.0003522 | 1.506e-08 | 0.4634 | -- | DIRECT |
| Biological Process (BP) | ncRNA 3'-end processing | 2.893e-14 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | cellular biosynthetic process | 3.797e-05 | 2.776e-11 | 0.5498 | -- | DIRECT |
| Biological Process (BP) | cellular protein metabolic process | 5.342e-06 | 1.28e-06 | 0.6778 | -- | DIRECT |
| Biological Process (BP) | single-organism transport | 1.194e-06 | 3.909e-10 | 0.8013 | -- | DIRECT |
| Biological Process (BP) | nucleic acid transport | 9.584e-11 | 0 | 1.921 | -- | DIRECT |
| Biological Process (BP) | rRNA transport | 3.971e-09 | 0 | 2.398 | -- | DIRECT |
| Biological Process (BP) | nuclear export | 0.0002453 | 2.823e-09 | 1.921 | -- | DIRECT |
| Biological Process (BP) | nuclear transport | 0.0007521 | 5.011e-09 | 1.658 | -- | DIRECT |
| Biological Process (BP) | establishment of localization | 3.1e-06 | 5.32e-09 | 0.7696 | -- | DIRECT |
| Biological Process (BP) | establishment of RNA localization | 3.649e-07 | 0 | 1.921 | -- | DIRECT |
| Biological Process (BP) | macromolecular complex assembly | 4.205e-06 | 0.0003119 | 1.252 | -- | DIRECT |
| Biological Process (BP) | RNA phosphodiester bond hydrolysis | 1.134e-13 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | RNA phosphodiester bond hydrolysis, endonucleolytic | 1.195e-14 | 0 | 2.699 | -- | DIRECT |
| Biological Process (BP) | organic substance biosynthetic process | 4.64e-05 | 3.783e-11 | 0.5376 | -- | DIRECT |
| Biological Process (BP) | biological_process | 0.6622 | 1 | 0 | -- | INHERITED FROM: cellular component organization or biogenesis || nuclear export || gene expression || nucleocytoplasmic transport || nucleic acid transport || maturation of SSU-rRNA || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || single-organism transport || nucleic acid phosphodiester bond hydrolysis || ncRNA processing || rRNA export from nucleus || ribosome assembly || establishment of RNA localization || cellular macromolecule biosynthetic process || protein metabolic process || transport || nuclear transport || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || ribonucleoprotein complex biogenesis || cellular biosynthetic process || cellular localization || ncRNA 3'-end processing || cellular protein metabolic process || macromolecular complex assembly || ribosome biogenesis || macromolecule biosynthetic process || ribonucleoprotein complex subunit organization || organic substance biosynthetic process || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA transport || rRNA metabolic process || ribonucleoprotein complex assembly || cytoplasmic transport || rRNA 3'-end processing || cellular macromolecular complex assembly || localization || organelle organization || organelle assembly || ncRNA metabolic process || RNA export from nucleus || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || establishment of localization || macromolecule metabolic process || biosynthetic process || RNA 3'-end processing || cleavage involved in rRNA processing || RNA localization || endonucleolytic cleavage involved in rRNA processing || ribosomal small subunit assembly || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || nucleobase-containing compound transport || ribosomal small subunit biogenesis |
| Biological Process (BP) | cellular component assembly | 0.008948 | 0.0003229 | 1.076 | -- | INHERITED FROM: organelle assembly || macromolecular complex assembly || ribonucleoprotein complex assembly || ribosome assembly || ribosomal small subunit assembly || cellular macromolecular complex assembly |
| Biological Process (BP) | single-organism process | 0.004284 | 0.05554 | 0.3316 | -- | INHERITED FROM: nuclear export || rRNA transport || nucleocytoplasmic transport || cytoplasmic transport || single-organism transport || organelle organization || rRNA export from nucleus || ribosome assembly || organelle assembly || RNA export from nucleus || nuclear transport || ribosomal small subunit assembly || cellular localization |
| Biological Process (BP) | cellular process | 0.09255 | 0.02294 | 0.1415 | -- | INHERITED FROM: ncRNA 3'-end processing || cellular protein metabolic process || nuclear export || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA metabolic process || nucleocytoplasmic transport || cytoplasmic transport || rRNA 3'-end processing || maturation of SSU-rRNA || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || nucleic acid phosphodiester bond hydrolysis || ncRNA processing || organelle organization || rRNA export from nucleus || ribosome assembly || organelle assembly || ncRNA metabolic process || cellular macromolecule biosynthetic process || RNA export from nucleus || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nuclear transport || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || cleavage involved in rRNA processing || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || endonucleolytic cleavage involved in rRNA processing || ribosomal small subunit assembly || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || cellular biosynthetic process || cellular localization |
| Biological Process (BP) | organic substance metabolic process | 0.01361 | 4.384e-05 | 0.2676 | -- | INHERITED FROM: ncRNA 3'-end processing || cellular protein metabolic process || ncRNA metabolic process || cellular macromolecule biosynthetic process || protein metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || macromolecule biosynthetic process || organic substance biosynthetic process || RNA phosphodiester bond hydrolysis, endonucleolytic || macromolecule metabolic process || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || rRNA metabolic process || cleavage involved in rRNA processing || gene expression || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || nucleic acid phosphodiester bond hydrolysis || ncRNA processing |
| Biological Process (BP) | metabolic process | 0.02495 | 0.0001735 | 0.2411 | -- | INHERITED FROM: ncRNA 3'-end processing || cellular protein metabolic process || ncRNA metabolic process || cellular macromolecule biosynthetic process || protein metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || macromolecule biosynthetic process || organic substance biosynthetic process || RNA phosphodiester bond hydrolysis, endonucleolytic || macromolecule metabolic process || biosynthetic process || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || rRNA metabolic process || cleavage involved in rRNA processing || gene expression || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || cellular biosynthetic process || nucleic acid phosphodiester bond hydrolysis || ncRNA processing |
| Biological Process (BP) | cellular metabolic process | 0.01161 | 3.089e-05 | 0.2708 | -- | INHERITED FROM: ncRNA 3'-end processing || cellular protein metabolic process || ncRNA metabolic process || cellular macromolecule biosynthetic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || RNA phosphodiester bond hydrolysis, endonucleolytic || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || rRNA metabolic process || cleavage involved in rRNA processing || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || cellular biosynthetic process || nucleic acid phosphodiester bond hydrolysis || ncRNA processing |
| Biological Process (BP) | RNA processing | 0.05687 | 0.08177 | 1.377 | -- | INHERITED FROM: ncRNA processing || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || cleavage involved in rRNA processing || RNA 3'-end processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA || rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| Biological Process (BP) | cellular component organization | 0.0002885 | 0.8646 | 0.6819 | -- | INHERITED FROM: ribonucleoprotein complex assembly || ribosome assembly || ribonucleoprotein complex subunit organization || organelle assembly || organelle organization || ribosomal small subunit assembly || macromolecular complex assembly || cellular macromolecular complex assembly |
| Biological Process (BP) | intracellular transport | 0.004187 | 1.704e-07 | 1.194 | -- | INHERITED FROM: cytoplasmic transport || rRNA export from nucleus || nuclear transport || nucleocytoplasmic transport || RNA export from nucleus || nuclear export |
| Biological Process (BP) | RNA transport | 1 | 0 | 1.921 | -- | INHERITED FROM: rRNA export from nucleus || rRNA transport || RNA export from nucleus |
| Biological Process (BP) | establishment of localization in cell | 0.009932 | 6.083e-06 | 1.119 | -- | INHERITED FROM: rRNA export from nucleus || nucleocytoplasmic transport || cytoplasmic transport || nuclear transport || RNA export from nucleus || nuclear export |
| Biological Process (BP) | nucleic acid metabolic process | 0.009452 | 0.001901 | 0.9066 | -- | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || maturation of 5.8S rRNA || ncRNA metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || nucleic acid phosphodiester bond hydrolysis || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || rRNA metabolic process || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing |
| Biological Process (BP) | nucleobase-containing compound metabolic process | 0.01471 | 0.001836 | 0.7305 | -- | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || rRNA metabolic process |
| Biological Process (BP) | cellular nitrogen compound metabolic process | 0.0553 | 0.01326 | 0.585 | -- | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || rRNA metabolic process |
| Biological Process (BP) | primary metabolic process | 0.006676 | 8.605e-06 | 0.2976 | -- | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || cellular protein metabolic process || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || protein metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || rRNA metabolic process |
| Biological Process (BP) | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 | 0 | 2.699 | -- | INHERITED FROM: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic |
| Biological Process (BP) | biosynthetic process | 7.077e-05 | 2.432e-11 | 0.52 | Least Informative | DIRECT |
| Biological Process (BP) | protein metabolic process | 2.139e-05 | 5.817e-09 | 0.6383 | Least Informative | DIRECT |
| Biological Process (BP) | cellular macromolecule metabolic process | 0.0001115 | 1.526e-09 | 0.4976 | Least Informative | DIRECT |
| Biological Process (BP) | localization | 7.213e-06 | 2.749e-07 | 0.6946 | Least Informative | DIRECT |
| Biological Process (BP) | cellular component organization or biogenesis | 0.000427 | 7.497e-08 | 0.6536 | Least Informative | DIRECT |
| Biological Process (BP) | single-organism cellular process | 0.1886 | 0.1028 | 0.3915 | Least Informative | INHERITED FROM: rRNA export from nucleus || ribosome assembly || organelle assembly || RNA export from nucleus || nuclear export || nuclear transport || nucleocytoplasmic transport || cytoplasmic transport || ribosomal small subunit assembly || cellular localization || organelle organization |
| Biological Process (BP) | heterocycle metabolic process | 0.04464 | 0.008008 | 0.6308 | Least Informative | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || rRNA metabolic process |
| Biological Process (BP) | cellular aromatic compound metabolic process | 0.04754 | 0.01091 | 0.6271 | Least Informative | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) | nitrogen compound metabolic process | 0.08104 | 0.02593 | 0.5171 | Least Informative | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) | organic cyclic compound metabolic process | 0.06484 | 0.01814 | 0.5817 | Least Informative | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA phosphodiester bond hydrolysis || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) | organelle organization | 1.048e-05 | 1.285e-10 | 0.8996 | Moderately Informative | DIRECT |
| Biological Process (BP) | gene expression | 4.318e-08 | 1.136e-13 | 0.8729 | Moderately Informative | DIRECT |
| Biological Process (BP) | cellular macromolecule biosynthetic process | 2.718e-08 | 0 | 0.9136 | Moderately Informative | DIRECT |
| Biological Process (BP) | cellular localization | 0.0002059 | 3.783e-10 | 1.027 | Moderately Informative | DIRECT |
| Biological Process (BP) | macromolecular complex subunit organization | 0.006063 | 1.682e-07 | 1.131 | Moderately Informative | INHERITED FROM: macromolecular complex assembly || ribonucleoprotein complex subunit organization || ribonucleoprotein complex assembly || ribosome assembly || ribosomal small subunit assembly || cellular macromolecular complex assembly |
| Biological Process (BP) | cellular component biogenesis | 0.01883 | 0.0001201 | 0.983 | Moderately Informative | INHERITED FROM: ribosomal small subunit biogenesis || organelle assembly || cleavage involved in rRNA processing || rRNA export from nucleus || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || ribonucleoprotein complex assembly || maturation of SSU-rRNA || ribosome assembly || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || endonucleolytic cleavage involved in rRNA processing || ribosomal small subunit assembly || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || ribonucleoprotein complex biogenesis || macromolecular complex assembly || ribosome biogenesis || cellular macromolecular complex assembly || rRNA processing |
| Biological Process (BP) | macromolecule localization | 0.004059 | 2.479e-07 | 1.046 | Moderately Informative | INHERITED FROM: rRNA export from nucleus || rRNA transport || RNA localization || establishment of RNA localization || RNA export from nucleus |
| Biological Process (BP) | organic substance transport | 0.03658 | 1.075e-05 | 0.9747 | Moderately Informative | INHERITED FROM: rRNA export from nucleus || nucleic acid transport || rRNA transport || nucleobase-containing compound transport || RNA export from nucleus |
| Biological Process (BP) | RNA metabolic process | 0.005456 | 8.062e-05 | 1.086 | Moderately Informative | INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || maturation of 5.8S rRNA || RNA phosphodiester bond hydrolysis || ncRNA metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || RNA 3'-end processing || rRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || RNA phosphodiester bond hydrolysis, endonucleolytic || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| Biological Process (BP) | nucleocytoplasmic transport | 7.168e-09 | 0 | 1.658 | Informative | DIRECT |
| Biological Process (BP) | cytoplasmic transport | 1.576e-08 | 0 | 1.337 | Informative | DIRECT |
| Biological Process (BP) | ribonucleoprotein complex biogenesis | 1.389e-08 | 0 | 1.658 | Informative | DIRECT |
| Biological Process (BP) | ncRNA processing | 5.46e-08 | 0 | 1.553 | Informative | DIRECT |
| Biological Process (BP) | cellular macromolecular complex assembly | 1.654e-07 | 0 | 1.523 | Informative | DIRECT |
| Biological Process (BP) | nitrogen compound transport | 0.006812 | 1.359e-08 | 1.377 | Informative | INHERITED FROM: rRNA export from nucleus || nucleobase-containing compound transport || nucleic acid transport || rRNA transport || RNA export from nucleus |
| Biological Process (BP) | rRNA processing | 2.103e-09 | 0.0001546 | 1.854 | Highly Informative | DIRECT |
| Biological Process (BP) | RNA export from nucleus | 5.641e-11 | 0 | 1.921 | Highly Informative | DIRECT |
| Biological Process (BP) | RNA 3'-end processing | 1.262e-11 | 0 | 2.222 | Highly Informative | DIRECT |
| Biological Process (BP) | organelle assembly | 1.077e-06 | 0 | 1.921 | Highly Informative | DIRECT |
| Biological Process (BP) | ribonucleoprotein complex subunit organization | 4.407e-11 | 1.133e-12 | 2 | Highly Informative | DIRECT |
| Biological Process (BP) | nucleic acid phosphodiester bond hydrolysis | 5.918e-10 | 0 | 2.097 | Highly Informative | DIRECT |
| Molecular Function (MF) | molecular_function | 0.6673 | 0.5944 | 0 | -- | INHERITED FROM: structural constituent of ribosome || structural molecule activity |
| Molecular Function (MF) | structural molecule activity | 1.835e-11 | 0 | 1.201 | Moderately Informative | DIRECT |
| Molecular Function (MF) | structural constituent of ribosome | 5.01e-13 | 7.56e-11 | 1.336 | Informative | DIRECT |
| Cellular Component (CC) | cytoplasm | 3.91e-05 | 4.667e-15 | 0.2515 | -- | DIRECT |
| Cellular Component (CC) | ribosome | 3.582e-08 | 0 | 1.079 | -- | DIRECT |
| Cellular Component (CC) | preribosome | 5.024e-06 | 1.752e-08 | 2.241 | -- | DIRECT |
| Cellular Component (CC) | macromolecular complex | 4.349e-05 | 0 | 0.4276 | -- | DIRECT |
| Cellular Component (CC) | organelle | 2.128e-05 | 3.667e-08 | 0.1836 | -- | DIRECT |
| Cellular Component (CC) | ribosomal subunit | 5.637e-09 | 0 | 1.144 | -- | DIRECT |
| Cellular Component (CC) | organelle part | 0.0002552 | 3.289e-10 | 0.3713 | -- | DIRECT |
| Cellular Component (CC) | cytosolic part | 3.84e-06 | 0 | 1.127 | -- | DIRECT |
| Cellular Component (CC) | non-membrane-bounded organelle | 0.002496 | 3.798e-12 | 0.6225 | -- | INHERITED FROM: ribosome || small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) | intracellular organelle | 2.085e-05 | 0.006262 | 0.1875 | -- | INHERITED FROM: ribosome || small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) | cellular_component | 0.118 | 0.0001709 | 0 | -- | INHERITED FROM: ribosome || small ribosomal subunit || 90S preribosome || cytosolic part || cytoplasm || macromolecular complex || ribonucleoprotein complex || organelle part || ribosomal subunit || preribosome || cytoplasmic part || organelle |
| Cellular Component (CC) | cell | 0.001064 | 2.118e-07 | 0.08068 | -- | INHERITED FROM: ribosome || small ribosomal subunit || 90S preribosome || cytosolic part || cytoplasm || ribonucleoprotein complex || ribosomal subunit || preribosome || cytoplasmic part |
| Cellular Component (CC) | cell part | 0.001059 | 2.089e-07 | 0.08068 | -- | INHERITED FROM: ribosome || small ribosomal subunit || 90S preribosome || cytosolic part || cytoplasm || ribonucleoprotein complex || ribosomal subunit || preribosome || cytoplasmic part |
| Cellular Component (CC) | intracellular | 0.0002253 | 0.06177 | 0.1266 | -- | INHERITED FROM: ribosome || small ribosomal subunit || preribosome || 90S preribosome || cytosolic part || cytoplasm || ribonucleoprotein complex || cytoplasmic part || ribosomal subunit |
| Cellular Component (CC) | intracellular part | 0.0002149 | 0.05236 | 0.1266 | -- | INHERITED FROM: ribosome || small ribosomal subunit || preribosome || 90S preribosome || cytosolic part || cytoplasm || ribonucleoprotein complex || cytoplasmic part || ribosomal subunit |
| Cellular Component (CC) | cytoplasmic part | 7.305e-06 | 1.846e-08 | 0.2605 | Least Informative | DIRECT |
| Cellular Component (CC) | intracellular organelle part | 0.01787 | 4.112e-06 | 0.3893 | Least Informative | INHERITED FROM: small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) | intracellular non-membrane-bounded organelle | 0.002534 | 4.135e-12 | 0.6225 | Least Informative | INHERITED FROM: ribosome || small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) | ribonucleoprotein complex | 2.187e-07 | 0 | 0.9505 | Moderately Informative | DIRECT |
| Cellular Component (CC) | cytosol | 0.1084 | 0.0004124 | 0.9618 | Moderately Informative | INHERITED FROM: cytosolic part |
| Cellular Component (CC) | small ribosomal subunit | 6.445e-14 | 0 | 1.5 | Informative | DIRECT |
| Cellular Component (CC) | 90S preribosome | 9.688e-14 | 0 | 2.241 | Highly Informative | DIRECT |
Document: GO annotation of SCOP domains
Gene Ontology (high-coverage) (show details)
Highlighted in gray are those with either FDR_singleton>0.001 or FDR_all>0.001
|
GO term |
FDR (all) |
IC level |
SDFO level |
Annotation (direct or inherited) |
| Biological Process (BP) |
ribosomal small subunit assembly |
1.061e-12 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
maturation of 5.8S rRNA |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
cleavage involved in rRNA processing |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
endonucleolytic cleavage involved in rRNA processing |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
RNA localization |
5.471e-13 |
1.921 |
-- |
DIRECT |
| Biological Process (BP) |
rRNA export from nucleus |
0 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
translation |
0 |
1.222 |
-- |
DIRECT |
| Biological Process (BP) |
transport |
3.21e-09 |
0.7747 |
-- |
DIRECT |
| Biological Process (BP) |
metabolic process |
0.0001735 |
0.2411 |
-- |
DIRECT |
| Biological Process (BP) |
macromolecule biosynthetic process |
0 |
0.8861 |
-- |
DIRECT |
| Biological Process (BP) |
nucleobase-containing compound transport |
3.805e-13 |
1.854 |
-- |
DIRECT |
| Biological Process (BP) |
rRNA metabolic process |
0 |
1.796 |
-- |
DIRECT |
| Biological Process (BP) |
cellular component assembly |
0.0003229 |
1.076 |
-- |
DIRECT |
| Biological Process (BP) |
ribonucleoprotein complex assembly |
1.922e-09 |
2.222 |
-- |
DIRECT |
| Biological Process (BP) |
maturation of SSU-rRNA |
1.124e-11 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
rRNA 3'-end processing |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
ncRNA metabolic process |
1.291e-06 |
1.444 |
-- |
DIRECT |
| Biological Process (BP) |
ribosome biogenesis |
0 |
1.699 |
-- |
DIRECT |
| Biological Process (BP) |
ribosome assembly |
5.43e-14 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
ribosomal small subunit biogenesis |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
macromolecule metabolic process |
1.506e-08 |
0.4634 |
-- |
DIRECT |
| Biological Process (BP) |
ncRNA 3'-end processing |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
cellular metabolic process |
3.089e-05 |
0.2708 |
-- |
DIRECT |
| Biological Process (BP) |
primary metabolic process |
8.605e-06 |
0.2976 |
-- |
DIRECT |
| Biological Process (BP) |
cellular biosynthetic process |
2.776e-11 |
0.5498 |
-- |
DIRECT |
| Biological Process (BP) |
cellular protein metabolic process |
1.28e-06 |
0.6778 |
-- |
DIRECT |
| Biological Process (BP) |
single-organism transport |
3.909e-10 |
0.8013 |
-- |
DIRECT |
| Biological Process (BP) |
intracellular transport |
1.704e-07 |
1.194 |
-- |
DIRECT |
| Biological Process (BP) |
nucleic acid transport |
0 |
1.921 |
-- |
DIRECT |
| Biological Process (BP) |
RNA transport |
0 |
1.921 |
-- |
DIRECT |
| Biological Process (BP) |
rRNA transport |
0 |
2.398 |
-- |
DIRECT |
| Biological Process (BP) |
nuclear export |
2.823e-09 |
1.921 |
-- |
DIRECT |
| Biological Process (BP) |
nuclear transport |
5.011e-09 |
1.658 |
-- |
DIRECT |
| Biological Process (BP) |
establishment of localization |
5.32e-09 |
0.7696 |
-- |
DIRECT |
| Biological Process (BP) |
establishment of RNA localization |
0 |
1.921 |
-- |
DIRECT |
| Biological Process (BP) |
establishment of localization in cell |
6.083e-06 |
1.119 |
-- |
DIRECT |
| Biological Process (BP) |
macromolecular complex assembly |
0.0003119 |
1.252 |
-- |
DIRECT |
| Biological Process (BP) |
organic substance metabolic process |
4.384e-05 |
0.2676 |
-- |
DIRECT |
| Biological Process (BP) |
RNA phosphodiester bond hydrolysis |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
RNA phosphodiester bond hydrolysis, endonucleolytic |
0 |
2.699 |
-- |
DIRECT |
| Biological Process (BP) |
organic substance biosynthetic process |
3.783e-11 |
0.5376 |
-- |
DIRECT |
| Biological Process (BP) |
biological_process |
1 |
0 |
-- |
INHERITED FROM: cellular component organization or biogenesis || nitrogen compound transport || primary metabolic process || nuclear export || establishment of localization in cell || gene expression || nucleocytoplasmic transport || macromolecular complex subunit organization || nucleic acid transport || maturation of SSU-rRNA || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || single-organism transport || nucleic acid phosphodiester bond hydrolysis || ncRNA processing || rRNA export from nucleus || ribosome assembly || establishment of RNA localization || cellular macromolecule biosynthetic process || organic substance transport || protein metabolic process || transport || nuclear transport || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || ribonucleoprotein complex biogenesis || metabolic process || intracellular transport || RNA transport || cellular biosynthetic process || cellular localization || ncRNA 3'-end processing || cellular protein metabolic process || macromolecular complex assembly || ribosome biogenesis || macromolecule biosynthetic process || ribonucleoprotein complex subunit organization || organic substance biosynthetic process || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA transport || rRNA metabolic process || ribonucleoprotein complex assembly || cytoplasmic transport || rRNA 3'-end processing || cellular macromolecular complex assembly || localization || organelle organization || cellular component biogenesis || organic substance metabolic process || cellular metabolic process || organelle assembly || ncRNA metabolic process || cellular component assembly || RNA export from nucleus || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || establishment of localization || macromolecule metabolic process || biosynthetic process || RNA 3'-end processing || cleavage involved in rRNA processing || RNA localization || endonucleolytic cleavage involved in rRNA processing || ribosomal small subunit assembly || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || nucleobase-containing compound transport || ribosomal small subunit biogenesis || macromolecule localization |
| Biological Process (BP) |
single-organism process |
0.05554 |
0.3316 |
-- |
INHERITED FROM: nuclear export || establishment of localization in cell || rRNA transport || nucleocytoplasmic transport || cytoplasmic transport || single-organism transport || organelle organization || rRNA export from nucleus || ribosome assembly || organelle assembly || RNA export from nucleus || nuclear transport || ribosomal small subunit assembly || intracellular transport || cellular localization |
| Biological Process (BP) |
cellular process |
0.02294 |
0.1415 |
-- |
INHERITED FROM: ncRNA 3'-end processing || cellular protein metabolic process || nuclear export || establishment of localization in cell || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA metabolic process || nucleocytoplasmic transport || cytoplasmic transport || rRNA 3'-end processing || maturation of SSU-rRNA || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || nucleic acid phosphodiester bond hydrolysis || ncRNA processing || organelle organization || rRNA export from nucleus || ribosome assembly || cellular metabolic process || organelle assembly || ncRNA metabolic process || cellular macromolecule biosynthetic process || RNA export from nucleus || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nuclear transport || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || translation || cleavage involved in rRNA processing || maturation of 5.8S rRNA || cellular macromolecule metabolic process || rRNA processing || endonucleolytic cleavage involved in rRNA processing || ribosomal small subunit assembly || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || intracellular transport || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || cellular biosynthetic process || cellular localization |
| Biological Process (BP) |
RNA processing |
0.08177 |
1.377 |
-- |
INHERITED FROM: ncRNA processing || maturation of 5.8S rRNA || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || cleavage involved in rRNA processing || RNA 3'-end processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA || rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| Biological Process (BP) |
cellular component organization |
0.8646 |
0.6819 |
-- |
INHERITED FROM: ribonucleoprotein complex assembly || ribosome assembly || macromolecular complex subunit organization || ribonucleoprotein complex subunit organization || organelle assembly || organelle organization || ribosomal small subunit assembly || macromolecular complex assembly || cellular component assembly || cellular macromolecular complex assembly |
| Biological Process (BP) |
nucleic acid metabolic process |
0.001901 |
0.9066 |
-- |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || maturation of 5.8S rRNA || ncRNA metabolic process || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || nucleic acid phosphodiester bond hydrolysis || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing |
| Biological Process (BP) |
nucleobase-containing compound metabolic process |
0.001836 |
0.7305 |
-- |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
cellular nitrogen compound metabolic process |
0.01326 |
0.585 |
-- |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
biosynthetic process |
2.432e-11 |
0.52 |
Least Informative |
DIRECT |
| Biological Process (BP) |
protein metabolic process |
5.817e-09 |
0.6383 |
Least Informative |
DIRECT |
| Biological Process (BP) |
cellular macromolecule metabolic process |
1.526e-09 |
0.4976 |
Least Informative |
DIRECT |
| Biological Process (BP) |
localization |
2.749e-07 |
0.6946 |
Least Informative |
DIRECT |
| Biological Process (BP) |
cellular component organization or biogenesis |
7.497e-08 |
0.6536 |
Least Informative |
DIRECT |
| Biological Process (BP) |
single-organism cellular process |
0.1028 |
0.3915 |
Least Informative |
INHERITED FROM: rRNA export from nucleus || ribosome assembly || organelle assembly || RNA export from nucleus || nuclear export || establishment of localization in cell || nuclear transport || nucleocytoplasmic transport || cytoplasmic transport || ribosomal small subunit assembly || intracellular transport || cellular localization || organelle organization |
| Biological Process (BP) |
heterocycle metabolic process |
0.008008 |
0.6308 |
Least Informative |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of 5.8S rRNA || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA processing || ncRNA metabolic process || RNA 3'-end processing || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
cellular aromatic compound metabolic process |
0.01091 |
0.6271 |
Least Informative |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
nitrogen compound metabolic process |
0.02593 |
0.5171 |
Least Informative |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
organic cyclic compound metabolic process |
0.01814 |
0.5817 |
Least Informative |
INHERITED FROM: cleavage involved in rRNA processing || ncRNA 3'-end processing || maturation of 5.8S rRNA || rRNA processing || rRNA 3'-end processing || maturation of SSU-rRNA || ncRNA metabolic process || endonucleolytic cleavage involved in rRNA processing || endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || RNA metabolic process || RNA phosphodiester bond hydrolysis || maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic || nucleic acid phosphodiester bond hydrolysis || RNA phosphodiester bond hydrolysis, endonucleolytic || ncRNA processing || RNA 3'-end processing || endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) || rRNA metabolic process |
| Biological Process (BP) |
organelle organization |
1.285e-10 |
0.8996 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
gene expression |
1.136e-13 |
0.8729 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
RNA metabolic process |
8.062e-05 |
1.086 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
macromolecule localization |
2.479e-07 |
1.046 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
cellular macromolecule biosynthetic process |
0 |
0.9136 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
macromolecular complex subunit organization |
1.682e-07 |
1.131 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
cellular component biogenesis |
0.0001201 |
0.983 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
cellular localization |
3.783e-10 |
1.027 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
organic substance transport |
1.075e-05 |
0.9747 |
Moderately Informative |
DIRECT |
| Biological Process (BP) |
nucleocytoplasmic transport |
0 |
1.658 |
Informative |
DIRECT |
| Biological Process (BP) |
cytoplasmic transport |
0 |
1.337 |
Informative |
DIRECT |
| Biological Process (BP) |
ribonucleoprotein complex biogenesis |
0 |
1.658 |
Informative |
DIRECT |
| Biological Process (BP) |
ncRNA processing |
0 |
1.553 |
Informative |
DIRECT |
| Biological Process (BP) |
cellular macromolecular complex assembly |
0 |
1.523 |
Informative |
DIRECT |
| Biological Process (BP) |
nitrogen compound transport |
1.359e-08 |
1.377 |
Informative |
DIRECT |
| Biological Process (BP) |
rRNA processing |
0.0001546 |
1.854 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
RNA export from nucleus |
0 |
1.921 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
RNA 3'-end processing |
0 |
2.222 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
organelle assembly |
0 |
1.921 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
ribonucleoprotein complex subunit organization |
1.133e-12 |
2 |
Highly Informative |
DIRECT |
| Biological Process (BP) |
nucleic acid phosphodiester bond hydrolysis |
0 |
2.097 |
Highly Informative |
DIRECT |
| Molecular Function (MF) |
molecular_function |
0.5944 |
0 |
-- |
INHERITED FROM: structural constituent of ribosome || structural molecule activity |
| Molecular Function (MF) |
structural molecule activity |
0 |
1.201 |
Moderately Informative |
DIRECT |
| Molecular Function (MF) |
structural constituent of ribosome |
7.56e-11 |
1.336 |
Informative |
DIRECT |
| Cellular Component (CC) |
cellular_component |
0.0001709 |
0 |
-- |
DIRECT |
| Cellular Component (CC) |
cell |
2.118e-07 |
0.08068 |
-- |
DIRECT |
| Cellular Component (CC) |
cytoplasm |
4.667e-15 |
0.2515 |
-- |
DIRECT |
| Cellular Component (CC) |
ribosome |
0 |
1.079 |
-- |
DIRECT |
| Cellular Component (CC) |
preribosome |
1.752e-08 |
2.241 |
-- |
DIRECT |
| Cellular Component (CC) |
macromolecular complex |
0 |
0.4276 |
-- |
DIRECT |
| Cellular Component (CC) |
organelle |
3.667e-08 |
0.1836 |
-- |
DIRECT |
| Cellular Component (CC) |
non-membrane-bounded organelle |
3.798e-12 |
0.6225 |
-- |
DIRECT |
| Cellular Component (CC) |
ribosomal subunit |
0 |
1.144 |
-- |
DIRECT |
| Cellular Component (CC) |
organelle part |
3.289e-10 |
0.3713 |
-- |
DIRECT |
| Cellular Component (CC) |
cytosolic part |
0 |
1.127 |
-- |
DIRECT |
| Cellular Component (CC) |
cell part |
2.089e-07 |
0.08068 |
-- |
DIRECT |
| Cellular Component (CC) |
intracellular organelle |
0.006262 |
0.1875 |
-- |
INHERITED FROM: ribosome || small ribosomal subunit || intracellular organelle part || cytosolic ribosome || intracellular non-membrane-bounded organelle || cytosolic small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) |
intracellular |
0.06177 |
0.1266 |
-- |
INHERITED FROM: ribosome || small ribosomal subunit || preribosome || 90S preribosome || cytosolic part || cytosol || intracellular organelle part || cytosolic ribosome || cytoplasm || ribonucleoprotein complex || cytoplasmic part || intracellular non-membrane-bounded organelle || cytosolic small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) |
intracellular part |
0.05236 |
0.1266 |
-- |
INHERITED FROM: ribosome || small ribosomal subunit || preribosome || 90S preribosome || cytosolic part || cytosol || intracellular organelle part || cytosolic ribosome || cytoplasm || ribonucleoprotein complex || cytoplasmic part || intracellular non-membrane-bounded organelle || cytosolic small ribosomal subunit || ribosomal subunit |
| Cellular Component (CC) |
intracellular non-membrane-bounded organelle |
4.135e-12 |
0.6225 |
Least Informative |
DIRECT |
| Cellular Component (CC) |
cytoplasmic part |
1.846e-08 |
0.2605 |
Least Informative |
DIRECT |
| Cellular Component (CC) |
intracellular organelle part |
4.112e-06 |
0.3893 |
Least Informative |
DIRECT |
| Cellular Component (CC) |
cytosol |
0.0004124 |
0.9618 |
Moderately Informative |
DIRECT |
| Cellular Component (CC) |
ribonucleoprotein complex |
0 |
0.9505 |
Moderately Informative |
DIRECT |
| Cellular Component (CC) |
small ribosomal subunit |
0 |
1.5 |
Informative |
DIRECT |
| Cellular Component (CC) |
cytosolic ribosome |
0.0002704 |
1.5 |
Informative |
DIRECT |
| Cellular Component (CC) |
cytosolic small ribosomal subunit |
4.689e-11 |
1.94 |
Highly Informative |
DIRECT |
| Cellular Component (CC) |
90S preribosome |
0 |
2.241 |
Highly Informative |
DIRECT |
Document: GO annotation of SCOP domains
Arabidopsis Plant Ontology (AP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: AP annotation of SCOP domains
UniProtKB KeyWords (KW) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: KW annotation of SCOP domains
InterPro annotation
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 3 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Ribosomal protein S2 domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 3 hidden Markov models representing the Ribosomal protein S2 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]
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