SUPERFAMILY 1.75 HMM library and genome assignments server


PRTase-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   PRTase-like [ 53270]
Superfamily:   PRTase-like [ 53271] (2)
Families:   Phosphoribosyltransferases (PRTases) [ 53272] (15)
  Phosphoribosylpyrophosphate synthetase-like [ 53296] (2)


Superfamily statistics
Genomes (3,154) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 30,659 160,535 56
Proteins 28,961 155,563 54


Functional annotation
General category Metabolism
Detailed category Nucleotide metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process00Least InformativeDirect
Biological Process (BP)nitrogen compound metabolic process00Least InformativeDirect
Biological Process (BP)biosynthetic process00Least InformativeDirect
Biological Process (BP)single-organism metabolic process1.232e-090Least InformativeDirect
Biological Process (BP)heterocycle metabolic process00Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process00Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.032980.7632Least InformativeInherited
Biological Process (BP)regulation of metabolic process0.0078321Least InformativeInherited
Biological Process (BP)regulation of cellular process0.34681Least InformativeInherited
Biological Process (BP)phosphate-containing compound metabolic process2.751e-140Moderately InformativeDirect
Biological Process (BP)heterocycle biosynthetic process00Moderately InformativeDirect
Biological Process (BP)aromatic compound biosynthetic process00Moderately InformativeDirect
Biological Process (BP)organophosphate metabolic process1.697e-110Moderately InformativeDirect
Biological Process (BP)cellular nitrogen compound biosynthetic process00Moderately InformativeDirect
Biological Process (BP)nucleobase-containing small molecule metabolic process00Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process4.866e-150Moderately InformativeDirect
Biological Process (BP)organic cyclic compound biosynthetic process00Moderately InformativeDirect
Biological Process (BP)organonitrogen compound biosynthetic process00Moderately InformativeDirect
Biological Process (BP)cellular component biogenesis0.0044260.4094Moderately InformativeInherited
Biological Process (BP)macromolecular complex subunit organization0.00043380.06945Moderately InformativeInherited
Biological Process (BP)cellular catabolic process0.50320.93Moderately InformativeInherited
Biological Process (BP)organic substance catabolic process0.77281Moderately InformativeInherited
Biological Process (BP)positive regulation of metabolic process3.102e-070.4789Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.00034371Moderately InformativeInherited
Biological Process (BP)nucleoside monophosphate metabolic process1.041e-090.0003147InformativeDirect
Biological Process (BP)nucleotide biosynthetic process9.198e-100InformativeDirect
Biological Process (BP)pigment metabolic process01.264e-14InformativeDirect
Biological Process (BP)cellular metabolic compound salvage00InformativeDirect
Biological Process (BP)ribose phosphate biosynthetic process0.0002290InformativeDirect
Biological Process (BP)protein oligomerization2.344e-101.352e-07InformativeDirect
Biological Process (BP)purine-containing compound biosynthetic process00InformativeDirect
Biological Process (BP)pyrimidine-containing compound metabolic process0.00069230InformativeDirect
Biological Process (BP)glycosyl compound biosynthetic process00InformativeDirect
Biological Process (BP)purine ribonucleotide metabolic process0.80861InformativeInherited
Biological Process (BP)nucleobase-containing compound catabolic process0.76251InformativeInherited
Biological Process (BP)organophosphate catabolic process0.00083040.6002InformativeInherited
Biological Process (BP)carbohydrate derivative catabolic process0.0078730.5501InformativeInherited
Biological Process (BP)organonitrogen compound catabolic process0.37831InformativeInherited
Biological Process (BP)purine ribonucleoside metabolic process0.45521InformativeInherited
Biological Process (BP)nucleobase metabolic process00Highly InformativeDirect
Biological Process (BP)regulation of cellular amine metabolic process00Highly InformativeDirect
Biological Process (BP)pigment biosynthetic process1.56e-149.148e-15Highly InformativeDirect
Biological Process (BP)protein homooligomerization2.054e-111.982e-09Highly InformativeDirect
Biological Process (BP)protein tetramerization2.12e-125.02e-12Highly InformativeDirect
Biological Process (BP)purine ribonucleoside monophosphate metabolic process0.16241Highly InformativeInherited
Biological Process (BP)nucleoside monophosphate catabolic process0.00068261Highly InformativeInherited
Biological Process (BP)purine ribonucleotide catabolic process11Highly InformativeInherited
Biological Process (BP)purine ribonucleoside catabolic process11Highly InformativeInherited
Biological Process (BP)guanosine-containing compound metabolic process0.50660.0051Highly InformativeInherited
Molecular Function (MF)transferase activity00Least InformativeDirect
Molecular Function (MF)binding0.081731Least InformativeInherited
Molecular Function (MF)cation binding2.028e-090.02413Moderately InformativeInherited
Molecular Function (MF)magnesium ion binding1.331e-150InformativeDirect
Molecular Function (MF)transferase activity, transferring glycosyl groups00InformativeDirect
Molecular Function (MF)protein dimerization activity1.351e-061.053e-09InformativeDirect
Molecular Function (MF)transferase activity, transferring pentosyl groups00Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0 Least Informative Direct
Biological Process (BP) nitrogen compound metabolic process 0 Least Informative Direct
Biological Process (BP) biosynthetic process 0 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.7632 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) phosphate-containing compound metabolic process 0 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) nucleobase-containing small molecule metabolic process 0 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) organonitrogen compound biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.4094 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.06945 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) organ development 0.7754 Moderately Informative Inherited
Biological Process (BP) carbohydrate metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.93 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.4789 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0.3432 Moderately Informative Inherited
Biological Process (BP) single-organism biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 0.0003147 Informative Direct
Biological Process (BP) nucleotide biosynthetic process 0 Informative Direct
Biological Process (BP) pigment metabolic process 1.264e-14 Informative Direct
Biological Process (BP) cellular metabolic compound salvage 0 Informative Direct
Biological Process (BP) ribose phosphate biosynthetic process 0 Informative Direct
Biological Process (BP) protein oligomerization 1.352e-07 Informative Direct
Biological Process (BP) purine-containing compound biosynthetic process 0 Informative Direct
Biological Process (BP) pyrimidine-containing compound metabolic process 0 Informative Direct
Biological Process (BP) glycosyl compound biosynthetic process 0 Informative Direct
Biological Process (BP) cell wall organization or biogenesis 0.01371 Informative Inherited
Biological Process (BP) carbohydrate biosynthetic process 1 Informative Inherited
Biological Process (BP) purine ribonucleotide metabolic process 1 Informative Inherited
Biological Process (BP) nucleobase-containing compound catabolic process 1 Informative Inherited
Biological Process (BP) organophosphate catabolic process 0.6002 Informative Inherited
Biological Process (BP) carbohydrate derivative catabolic process 0.5501 Informative Inherited
Biological Process (BP) organonitrogen compound catabolic process 1 Informative Inherited
Biological Process (BP) cellular biogenic amine metabolic process 0.001232 Informative Inherited
Biological Process (BP) organ morphogenesis 0.4153 Informative Inherited
Biological Process (BP) purine ribonucleoside metabolic process 1 Informative Inherited
Biological Process (BP) alpha-amino acid biosynthetic process 0.2359 Informative Inherited
Biological Process (BP) pyrimidine nucleotide metabolic process 1.661e-05 Highly Informative Direct
Biological Process (BP) nucleobase metabolic process 0 Highly Informative Direct
Biological Process (BP) nucleoside monophosphate biosynthetic process 9.683e-11 Highly Informative Direct
Biological Process (BP) regulation of cellular amine metabolic process 0 Highly Informative Direct
Biological Process (BP) cellular biogenic amine biosynthetic process 2.863e-07 Highly Informative Direct
Biological Process (BP) external encapsulating structure organization 0.0009559 Highly Informative Direct
Biological Process (BP) pyrimidine ribonucleoside metabolic process 2.257e-07 Highly Informative Direct
Biological Process (BP) pigment biosynthetic process 9.148e-15 Highly Informative Direct
Biological Process (BP) monosaccharide biosynthetic process 0.0001245 Highly Informative Direct
Biological Process (BP) protein homooligomerization 1.982e-09 Highly Informative Direct
Biological Process (BP) protein tetramerization 5.02e-12 Highly Informative Direct
Biological Process (BP) imidazole-containing compound metabolic process 3.656e-08 Highly Informative Direct
Biological Process (BP) pyrimidine-containing compound biosynthetic process 8.912e-11 Highly Informative Direct
Biological Process (BP) post-embryonic development 0.0713 Highly Informative Inherited
Biological Process (BP) nucleoside monophosphate catabolic process 1 Highly Informative Inherited
Biological Process (BP) purine ribonucleotide catabolic process 1 Highly Informative Inherited
Biological Process (BP) purine ribonucleoside catabolic process 1 Highly Informative Inherited
Biological Process (BP) guanosine-containing compound metabolic process 0.0051 Highly Informative Inherited
Biological Process (BP) response to drug 0.05092 Highly Informative Inherited
Biological Process (BP) purine ribonucleoside monophosphate metabolic process 1 Highly Informative Inherited
Biological Process (BP) post-embryonic organ development 0.003775 Highly Informative Inherited
Biological Process (BP) indole-containing compound biosynthetic process 0.06409 Highly Informative Inherited
Biological Process (BP) tryptophan metabolic process 0.003255 Highly Informative Inherited
Biological Process (BP) aromatic amino acid family biosynthetic process 0.06867 Highly Informative Inherited
Molecular Function (MF) transferase activity 0 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1 Moderately Informative Inherited
Molecular Function (MF) lyase activity 0.4416 Moderately Informative Inherited
Molecular Function (MF) cation binding 0.02413 Moderately Informative Inherited
Molecular Function (MF) magnesium ion binding 0 Informative Direct
Molecular Function (MF) transferase activity, transferring glycosyl groups 0 Informative Direct
Molecular Function (MF) carbon-carbon lyase activity 2.462e-05 Informative Direct
Molecular Function (MF) purine ribonucleoside binding 1.434e-05 Informative Direct
Molecular Function (MF) protein dimerization activity 1.053e-09 Informative Direct
Molecular Function (MF) nucleotide binding 0.7542 Informative Inherited
Molecular Function (MF) kinase activity 1 Informative Inherited
Molecular Function (MF) transferase activity, transferring pentosyl groups 0 Highly Informative Direct
Molecular Function (MF) carboxy-lyase activity 5.574e-07 Highly Informative Direct
Molecular Function (MF) nucleobase-containing compound kinase activity 3.184e-07 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0.9664 Least Informative Inherited
Cellular Component (CC) cytosol 0.0001947 Moderately Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep1Moderately InformativeInherited
Enzyme Commission (EC)Diphosphotransferases0InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)connective tissue disease0Moderately InformativeDirect
Disease Ontology (DO)arthritis0InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the urinary system0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal renal physiology0InformativeDirect
Phenotypic Abnormality (PA)Renal insufficiency0Highly InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism environmental stimulus response variant0.01393Least InformativeInherited
Worm Phenotype (WP)chemical response variant0.001416Moderately InformativeInherited
Worm Phenotype (WP)drug resistant5.341e-05InformativeDirect

Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details) Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups1Least InformativeInherited
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as acceptor1Moderately InformativeInherited
Enzyme Commission (EC)Pentosyltransferases0InformativeDirect
Enzyme Commission (EC)Diphosphotransferases0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTranscription regulation1.571e-05Moderately InformativeDirect
Biological processPyrimidine biosynthesis0Highly InformativeDirect
Biological processTranscription termination0Highly InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
DomainGlutamine amidotransferase1.644e-05Highly InformativeDirect
Molecular functionNucleotide-binding5.62e-14Least InformativeDirect
Molecular functionMagnesium0Moderately InformativeDirect
Molecular functionGTP-binding0InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

UniProtKB UniPathway (UP)

(show details)
UP termFDR (all)SDUP levelAnnotation (direct or inherited)
UniPathway (UP)aromatic compound metabolism0Least InformativeDirect
UniPathway (UP)nucleotide metabolism0Moderately InformativeDirect
UniPathway (UP)purine metabolism0Moderately InformativeDirect
UniPathway (UP)metabolic intermediate biosynthesis1Moderately InformativeInherited
UniPathway (UP)purine biosynthesis via salvage pathway0InformativeDirect
UniPathway (UP)nucleotide biosynthesis1InformativeInherited
UniPathway (UP)5-phospho-alpha-D-ribose 1-diphosphate biosynthesis0Highly InformativeDirect
UniPathway (UP)pyrimidine salvage0Highly InformativeDirect
UniPathway (UP)AMP biosynthesis0Highly InformativeDirect
UniPathway (UP)XMP biosynthesis0Highly InformativeDirect
UniPathway (UP)CTP biosynthesis1Highly InformativeInherited

Document: UP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 39 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a PRTase-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 39 hidden Markov models representing the PRTase-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · UniProtKB UniPathway (UP) · Internal database links ]