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Nucleotide-diphospho-sugar transferases superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Nucleotide-diphospho-sugar transferases [ 53447]
Superfamily:   Nucleotide-diphospho-sugar transferases [ 53448] (19)
Families:   Spore coat polysaccharide biosynthesis protein SpsA [ 53449]
  beta 1,4 galactosyltransferase (b4GalT1) [ 53452]
  Galactosyltransferase LgtC [ 53458]
  Glycogenin [ 75273]
  alpha-1,3-galactosyltransferase-like [ 64131] (3)
  UDP-glucose pyrophosphorylase [ 53461] (3)
  glucose-1-phosphate thymidylyltransferase [ 53464] (3)
  1,3-glucuronyltransferase [ 53467] (2)
  N-acetylglucosaminyltransferase I [ 64136]
  Exostosin [ 89760]
  Molybdenum cofactor biosynthesis protein MobA [ 53470]
  Cytidylytransferase [ 68901] (6)
  Glycolipid 2-alpha-mannosyltransferase [ 102609]
  Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain [ 117702]
  MGS-like [ 142691]
  TTHA0179-like [ 159717]
  mannose-1-phosphate guanylyl transferase [ 159720]
  MM2497-like [ 159723]
  Glycosylating toxin catalytic domain-like [ 159726] (3)


Superfamily statistics
Genomes (3,210) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 93,001 506,594 97
Proteins 91,377 496,761 97


Functional annotation
General category Metabolism
Detailed category Transferases

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)biosynthetic process00Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.00006850.000000000005544Least InformativeDirect
Biological Process (BP)primary metabolic process0.0000000000074490.00000001783Least InformativeDirect
Biological Process (BP)single-organism metabolic process00Least InformativeDirect
Biological Process (BP)single-organism cellular process0.00000029410Least InformativeDirect
Biological Process (BP)cellular component organization or biogenesis0.075130.4136Least InformativeInherited
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)multicellular organismal process11Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)cellular nitrogen compound metabolic process11Least InformativeInherited
Biological Process (BP)biological regulation11Least InformativeInherited
Biological Process (BP)organonitrogen compound metabolic process10.000001876Least InformativeInherited
Biological Process (BP)carbohydrate metabolic process00Moderately InformativeDirect
Biological Process (BP)lipid metabolic process0.000000000087330.0004422Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process00Moderately InformativeDirect
Biological Process (BP)carbohydrate derivative metabolic process00Moderately InformativeDirect
Biological Process (BP)sulfur compound metabolic process0.1850.00009477Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process0.79761Moderately InformativeInherited
Biological Process (BP)multi-organism process0.96211Moderately InformativeInherited
Biological Process (BP)cofactor metabolic process11Moderately InformativeInherited
Biological Process (BP)heterocycle biosynthetic process11Moderately InformativeInherited
Biological Process (BP)aromatic compound biosynthetic process11Moderately InformativeInherited
Biological Process (BP)organic cyclic compound biosynthetic process11Moderately InformativeInherited
Biological Process (BP)regulation of cell communication0.97771Moderately InformativeInherited
Biological Process (BP)regulation of signaling0.97811Moderately InformativeInherited
Biological Process (BP)regulation of response to stimulus11Moderately InformativeInherited
Biological Process (BP)organophosphate biosynthetic process0.27251Moderately InformativeInherited
Biological Process (BP)cellular protein modification process0.2960.0006593Moderately InformativeInherited
Biological Process (BP)generation of precursor metabolites and energy0.92191Moderately InformativeInherited
Biological Process (BP)oxidation-reduction process11Moderately InformativeInherited
Biological Process (BP)polysaccharide metabolic process0.0000000000060620InformativeDirect
Biological Process (BP)membrane lipid metabolic process0.000000000000016390InformativeDirect
Biological Process (BP)carbohydrate biosynthetic process0.00000000028440InformativeDirect
Biological Process (BP)cellular carbohydrate metabolic process0.0000000000000031440InformativeDirect
Biological Process (BP)liposaccharide metabolic process00InformativeDirect
Biological Process (BP)regulation of cell proliferation0.054971InformativeInherited
Biological Process (BP)sulfur compound biosynthetic process0.10620.0008756InformativeInherited
Biological Process (BP)peptidyl-amino acid modification11InformativeInherited
Biological Process (BP)phospholipid metabolic process0.0088430.0626InformativeInherited
Biological Process (BP)glycerolipid metabolic process0.60581InformativeInherited
Biological Process (BP)monosaccharide metabolic process0.000011140.2061InformativeInherited
Biological Process (BP)aminoglycan biosynthetic process0.000000000000029080Highly InformativeDirect
Biological Process (BP)energy reserve metabolic process0.0000071870Highly InformativeDirect
Biological Process (BP)lipopolysaccharide metabolic process0.00013040.00006661Highly InformativeDirect
Biological Process (BP)glycoprotein metabolic process00Highly InformativeDirect
Biological Process (BP)nucleotide-sugar metabolic process0.0000000000079650Highly InformativeDirect
Biological Process (BP)glycolipid biosynthetic process0.0000068660.00005313Highly InformativeDirect
Biological Process (BP)Mo-molybdopterin cofactor metabolic process0.00000014330.000001209Highly InformativeDirect
Biological Process (BP)sphingolipid biosynthetic process0.000000000060290.0000000000004789Highly InformativeDirect
Biological Process (BP)extracellular matrix organization0.0000011210Highly InformativeDirect
Biological Process (BP)cellular polysaccharide biosynthetic process0.000000014250Highly InformativeDirect
Biological Process (BP)cell wall biogenesis0.000000000000026290Highly InformativeDirect
Biological Process (BP)macromolecule glycosylation00Highly InformativeDirect
Biological Process (BP)phosphatidylinositol metabolic process0.000000000110.0006603Highly InformativeDirect
Biological Process (BP)regulation of fibroblast proliferation0.000000088260.000924Highly InformativeDirect
Biological Process (BP)cellular component macromolecule biosynthetic process0.000049640Highly InformativeDirect
Biological Process (BP)glycosaminoglycan metabolic process01Highly InformativeInherited
Biological Process (BP)negative regulation of cell proliferation0.00057741Highly InformativeInherited
Biological Process (BP)multi-organism cellular process0.027710.07977Highly InformativeInherited
Biological Process (BP)glycosphingolipid metabolic process0.0020780.0000000000008334Highly InformativeInherited
Biological Process (BP)glycerophospholipid biosynthetic process0.0098010.03901Highly InformativeInherited
Molecular Function (MF)transferase activity00Least InformativeDirect
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)transferase activity, transferring phosphorus-containing groups0.97041Moderately InformativeInherited
Molecular Function (MF)metal ion binding0.0010260.00001192Moderately InformativeInherited
Molecular Function (MF)transferase activity, transferring glycosyl groups00InformativeDirect
Molecular Function (MF)nucleotidyltransferase activity00InformativeDirect
Molecular Function (MF)transferase activity, transferring hexosyl groups0.0000000011820Highly InformativeDirect
Molecular Function (MF)manganese ion binding0.000012620Highly InformativeDirect
Molecular Function (MF)UDP-glycosyltransferase activity0.0010820Highly InformativeInherited
Cellular Component (CC)intracellular membrane-bounded organelle0.011030.003541Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.36240.2741Least InformativeInherited
Cellular Component (CC)membrane0.00007670.03057Least InformativeInherited
Cellular Component (CC)cytoplasmic part0.026350Least InformativeInherited
Cellular Component (CC)endomembrane system00Moderately InformativeDirect
Cellular Component (CC)bounding membrane of organelle0.00000016510.0000000000002142Moderately InformativeDirect
Cellular Component (CC)transferase complex0.28411Moderately InformativeInherited
Cellular Component (CC)intrinsic component of membrane0.034730.04542Moderately InformativeInherited
Cellular Component (CC)endoplasmic reticulum membrane0.000013690.000000006257InformativeDirect
Cellular Component (CC)Golgi apparatus00InformativeDirect
Cellular Component (CC)cis-Golgi network0.00000085560.0000001085Highly InformativeDirect
Cellular Component (CC)intrinsic component of organelle membrane0.00069860.000004487Highly InformativeDirect
Cellular Component (CC)Golgi subcompartment0.000015280Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.000000000005544 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00000001783 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.000001876 Least Informative Direct
Biological Process (BP) biological regulation 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.4136 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular protein modification process 0.0006593 Moderately Informative Direct
Biological Process (BP) lipid metabolic process 0.0004422 Moderately Informative Direct
Biological Process (BP) sulfur compound metabolic process 0.00009477 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.0001755 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0 Moderately Informative Direct
Biological Process (BP) animal organ development 1 Moderately Informative Inherited
Biological Process (BP) cellular component assembly 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 0.8271 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) small molecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) tissue development 0.3691 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) reproduction 0.1805 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 1 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 1 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) single-organism transport 1 Moderately Informative Inherited
Biological Process (BP) organophosphate biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) peptide metabolic process 1 Moderately Informative Inherited
Biological Process (BP) gene expression 1 Moderately Informative Inherited
Biological Process (BP) generation of precursor metabolites and energy 1 Moderately Informative Inherited
Biological Process (BP) oxidation-reduction process 1 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) membrane lipid metabolic process 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0 Informative Direct
Biological Process (BP) growth 0.0009133 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) sulfur compound biosynthetic process 0.0008756 Informative Direct
Biological Process (BP) liposaccharide metabolic process 0 Informative Direct
Biological Process (BP) animal organ morphogenesis 0.7806 Informative Inherited
Biological Process (BP) cell development 0.2693 Informative Inherited
Biological Process (BP) system process 1 Informative Inherited
Biological Process (BP) central nervous system development 0.689 Informative Inherited
Biological Process (BP) embryo development 0.5826 Informative Inherited
Biological Process (BP) reproductive system development 0.3326 Informative Inherited
Biological Process (BP) single organism reproductive process 1 Informative Inherited
Biological Process (BP) post-embryonic development 0.6382 Informative Inherited
Biological Process (BP) regulation of cell proliferation 1 Informative Inherited
Biological Process (BP) movement of cell or subcellular component 1 Informative Inherited
Biological Process (BP) locomotion 1 Informative Inherited
Biological Process (BP) localization of cell 1 Informative Inherited
Biological Process (BP) regulation of anatomical structure size 0.1965 Informative Inherited
Biological Process (BP) anatomical structure formation involved in morphogenesis 0.6605 Informative Inherited
Biological Process (BP) peptidyl-amino acid modification 1 Informative Inherited
Biological Process (BP) developmental process involved in reproduction 0.2012 Informative Inherited
Biological Process (BP) cellular component morphogenesis 0.9742 Informative Inherited
Biological Process (BP) mitotic cell cycle 1 Informative Inherited
Biological Process (BP) cell cycle process 1 Informative Inherited
Biological Process (BP) epithelium development 1 Informative Inherited
Biological Process (BP) phospholipid metabolic process 0.0626 Informative Inherited
Biological Process (BP) glycerolipid metabolic process 1 Informative Inherited
Biological Process (BP) posttranscriptional regulation of gene expression 1 Informative Inherited
Biological Process (BP) regulation of cellular amide metabolic process 0.9285 Informative Inherited
Biological Process (BP) monosaccharide metabolic process 0.2061 Informative Inherited
Biological Process (BP) circulatory system development 1 Informative Inherited
Biological Process (BP) vasculogenesis 0.0004895 Highly Informative Direct
Biological Process (BP) aminoglycan biosynthetic process 0 Highly Informative Direct
Biological Process (BP) amino sugar metabolic process 0.00000003403 Highly Informative Direct
Biological Process (BP) energy reserve metabolic process 0 Highly Informative Direct
Biological Process (BP) translational initiation 0.0000004768 Highly Informative Direct
Biological Process (BP) ceramide metabolic process 0.00003501 Highly Informative Direct
Biological Process (BP) glycosphingolipid metabolic process 0.0000000000008334 Highly Informative Direct
Biological Process (BP) lipopolysaccharide metabolic process 0.00006661 Highly Informative Direct
Biological Process (BP) glycoprotein metabolic process 0 Highly Informative Direct
Biological Process (BP) nucleotide-sugar metabolic process 0 Highly Informative Direct
Biological Process (BP) glycolipid biosynthetic process 0.00005313 Highly Informative Direct
Biological Process (BP) Mo-molybdopterin cofactor metabolic process 0.000001209 Highly Informative Direct
Biological Process (BP) sphingolipid biosynthetic process 0.0000000000004789 Highly Informative Direct
Biological Process (BP) extracellular matrix organization 0 Highly Informative Direct
Biological Process (BP) cellular polysaccharide biosynthetic process 0 Highly Informative Direct
Biological Process (BP) cell wall biogenesis 0 Highly Informative Direct
Biological Process (BP) macromolecule glycosylation 0 Highly Informative Direct
Biological Process (BP) cell wall macromolecule metabolic process 0 Highly Informative Direct
Biological Process (BP) phosphatidylinositol metabolic process 0.0006603 Highly Informative Direct
Biological Process (BP) regulation of fibroblast proliferation 0.000924 Highly Informative Direct
Biological Process (BP) seed development 0.0006178 Highly Informative Direct
Biological Process (BP) multicellular organismal homeostasis 0.0000005548 Highly Informative Direct
Biological Process (BP) cellular component macromolecule biosynthetic process 0 Highly Informative Direct
Biological Process (BP) morphogenesis of an epithelium 0.8077 Highly Informative Inherited
Biological Process (BP) heart development 0.6048 Highly Informative Inherited
Biological Process (BP) multi-multicellular organism process 0.01071 Highly Informative Inherited
Biological Process (BP) cell maturation 0.3724 Highly Informative Inherited
Biological Process (BP) gliogenesis 0.005672 Highly Informative Inherited
Biological Process (BP) negative regulation of cell proliferation 1 Highly Informative Inherited
Biological Process (BP) pigmentation 0.3431 Highly Informative Inherited
Biological Process (BP) multi-organism cellular process 0.07977 Highly Informative Inherited
Biological Process (BP) cellular component assembly involved in morphogenesis 0.9737 Highly Informative Inherited
Biological Process (BP) gastrulation 0.1264 Highly Informative Inherited
Biological Process (BP) appendage development 0.6406 Highly Informative Inherited
Biological Process (BP) embryonic organ development 0.562 Highly Informative Inherited
Biological Process (BP) glycosaminoglycan metabolic process 1 Highly Informative Inherited
Biological Process (BP) peptidyl-lysine modification 1 Highly Informative Inherited
Biological Process (BP) cell growth 0.9671 Highly Informative Inherited
Biological Process (BP) developmental growth involved in morphogenesis 0.2023 Highly Informative Inherited
Biological Process (BP) cytokinesis 0.01286 Highly Informative Inherited
Biological Process (BP) tube morphogenesis 0.8145 Highly Informative Inherited
Biological Process (BP) glycerophospholipid biosynthetic process 0.03901 Highly Informative Inherited
Molecular Function (MF) transferase activity 0 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) metal ion binding 0.00001192 Moderately Informative Direct
Molecular Function (MF) oxidoreductase activity 1 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 1 Moderately Informative Inherited
Molecular Function (MF) small molecule binding 1 Moderately Informative Inherited
Molecular Function (MF) carbohydrate derivative binding 1 Moderately Informative Inherited
Molecular Function (MF) molecular function regulator 0.8942 Moderately Informative Inherited
Molecular Function (MF) nucleic acid binding 1 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring glycosyl groups 0 Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Molecular Function (MF) ribonucleotide binding 1 Informative Inherited
Molecular Function (MF) RNA binding 0.9376 Informative Inherited
Molecular Function (MF) guanyl-nucleotide exchange factor activity 0.000002263 Highly Informative Direct
Molecular Function (MF) translation factor activity, RNA binding 0.0000000000007291 Highly Informative Direct
Molecular Function (MF) UDP-glycosyltransferase activity 0 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring hexosyl groups 0 Highly Informative Direct
Molecular Function (MF) manganese ion binding 0 Highly Informative Direct
Molecular Function (MF) monosaccharide binding 0.0001589 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring pentosyl groups 1 Highly Informative Inherited
Molecular Function (MF) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxyge 0.1568 Highly Informative Inherited
Molecular Function (MF) dioxygenase activity 0.006629 Highly Informative Inherited
Cellular Component (CC) cytoplasmic part 0 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.2741 Least Informative Inherited
Cellular Component (CC) membrane 0.03057 Least Informative Inherited
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.003541 Least Informative Inherited
Cellular Component (CC) endomembrane system 0 Moderately Informative Direct
Cellular Component (CC) bounding membrane of organelle 0.0000000000002142 Moderately Informative Direct
Cellular Component (CC) cell projection 1 Moderately Informative Inherited
Cellular Component (CC) transferase complex 1 Moderately Informative Inherited
Cellular Component (CC) intrinsic component of membrane 0.04542 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 1 Moderately Informative Inherited
Cellular Component (CC) endoplasmic reticulum membrane 0.000000006257 Informative Direct
Cellular Component (CC) Golgi apparatus 0 Informative Direct
Cellular Component (CC) supramolecular polymer 1 Informative Inherited
Cellular Component (CC) cis-Golgi network 0.0000001085 Highly Informative Direct
Cellular Component (CC) intrinsic component of organelle membrane 0.000004487 Highly Informative Direct
Cellular Component (CC) Golgi subcompartment 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Lyases1Least InformativeInherited
Enzyme Commission (EC)Oxidoreductases1Least InformativeInherited
Enzyme Commission (EC)Transferring groups other than amino-acyl groups0Moderately InformativeDirect
Enzyme Commission (EC)Glycosyltransferases0.00000000007521Moderately InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases1Moderately InformativeInherited
Enzyme Commission (EC)Acting on paired donors, with incorporation or red0.8741Moderately InformativeInherited
Enzyme Commission (EC)Transferring other groups1InformativeInherited
Enzyme Commission (EC)Interconverting aldoses and ketoses, and related c1InformativeInherited
Enzyme Commission (EC)Phosphorus-oxygen lyases1InformativeInherited
Enzyme Commission (EC)Cellulose synthase (UDP-forming)0Highly InformativeDirect
Enzyme Commission (EC)With 2-oxoglutarate as one donor, and incorporatio0.00000001082Highly InformativeDirect
Enzyme Commission (EC)Transferases for other substituted phosphate group0.3125Highly InformativeInherited

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processLipid metabolism1Moderately InformativeInherited
Biological processCell shape0InformativeDirect
Biological processAntibiotic resistance0InformativeDirect
Biological processCell wall biogenesis/degradation0InformativeDirect
Biological processLipid biosynthesis0.1311InformativeInherited
Biological processMolybdenum cofactor biosynthesis0Highly InformativeDirect
Biological processLipopolysaccharide biosynthesis0Highly InformativeDirect
Biological processIsoprene biosynthesis0Highly InformativeDirect
Biological processPeptidoglycan synthesis0Highly InformativeDirect
Biological processSphingolipid metabolism0.00000000000001911Highly InformativeDirect
Biological processNodulation0.0000000009398Highly InformativeDirect
Biological processLipid A biosynthesis0.000000005087Highly InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentCytoplasm0.00004297Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndoplasmic reticulum6.573e-16Moderately InformativeDirect
Cellular componentPlastid1Moderately InformativeInherited
DiseaseDystroglycanopathy0.000000001958Highly InformativeDirect
DiseaseCongenital muscular dystrophy0.00000003922Highly InformativeDirect
DomainTransmembrane0Least InformativeDirect
DomainRepeat0.0000000000003777Least InformativeDirect
DomainSignal-anchor0InformativeDirect
Molecular functionMagnesium0Least InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding1Least InformativeInherited
Molecular functionManganese0Moderately InformativeDirect
Molecular functionLectin0InformativeDirect
Molecular functionGTP-binding0InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0Moderately InformativeDirect
Post-translational modificationAcyltransferase0InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect
Post-translational modificationGlycoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 43 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Nucleotide-diphospho-sugar transferases domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 43 hidden Markov models representing the Nucleotide-diphospho-sugar transferases superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]