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Phosphoglucomutase, first 3 domains superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Phosphoglucomutase, first 3 domains [ 53737]
Superfamily:   Phosphoglucomutase, first 3 domains [ 53738]
Families:   Phosphoglucomutase, first 3 domains [ 53739] (3)


Superfamily statistics
Genomes (3,187) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 27,490 146,324 24
Proteins 9,539 51,718 8


Functional annotation
General category Metabolism
Detailed category Carbohydrate metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 0.00003323 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.6772 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.007346 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.1092 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 0.2342 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.1008 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.2443 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) generation of precursor metabolites and energy 0.00007693 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.0000001971 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0000000003378 Moderately Informative Direct
Biological Process (BP) single-organism catabolic process 0.1302 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.731 Moderately Informative Inherited
Biological Process (BP) oxidation-reduction process 0.04291 Moderately Informative Inherited
Biological Process (BP) polysaccharide metabolic process 0.000000002008 Informative Direct
Biological Process (BP) monosaccharide metabolic process 0.000000002015 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0.00000001877 Informative Direct
Biological Process (BP) cellular carbohydrate metabolic process 0.000000008836 Informative Direct
Biological Process (BP) carbohydrate catabolic process 0.2476 Informative Inherited
Biological Process (BP) amino sugar metabolic process 0.00000001337 Highly Informative Direct
Biological Process (BP) energy reserve metabolic process 0.0000000001953 Highly Informative Direct
Biological Process (BP) nucleotide-sugar metabolic process 0.0000000446 Highly Informative Direct
Biological Process (BP) cellular polysaccharide biosynthetic process 0.000000000002764 Highly Informative Direct
Biological Process (BP) monosaccharide catabolic process 0.0001705 Highly Informative Direct
Molecular Function (MF) isomerase activity 0 Moderately Informative Direct
Molecular Function (MF) intramolecular transferase activity 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Isomerases0Least InformativeDirect
Enzyme Commission (EC)Phosphotransferases (phosphomutases)0InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Biological processGlucose metabolism0Highly InformativeDirect
Biological processLipopolysaccharide biosynthesis0.000000001096Highly InformativeDirect
Molecular functionMagnesium0Least InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Post-translational modificationIsomerase0Moderately InformativeDirect
Post-translational modificationPhosphoprotein0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 9 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Phosphoglucomutase, first 3 domains domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 9 hidden Markov models representing the Phosphoglucomutase, first 3 domains superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]