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Periplasmic binding protein-like II superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   Periplasmic binding protein-like II [ 53849]
Superfamily:   Periplasmic binding protein-like II [ 53850] (3)
Families:   Phosphate binding protein-like [ 53851] (40)
  Transferrin [ 53888] (3)
  PG0945 N-terminal domain-like [ 159818]


Superfamily statistics
Genomes (3,240) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 155,782 1,035,571 216
Proteins 153,624 1,024,016 192


Functional annotation
General category Processes_IC
Detailed category Ion metabolism and transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)response to stimulus10.1125Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism cellular process11Least InformativeInherited
Biological Process (BP)macromolecule metabolic process11Least InformativeInherited
Biological Process (BP)primary metabolic process11Least InformativeInherited
Biological Process (BP)biosynthetic process10.042Least InformativeInherited
Biological Process (BP)organonitrogen compound metabolic process11Least InformativeInherited
Biological Process (BP)cellular nitrogen compound metabolic process11Least InformativeInherited
Biological Process (BP)heterocycle metabolic process11Least InformativeInherited
Biological Process (BP)cellular aromatic compound metabolic process11Least InformativeInherited
Biological Process (BP)single-organism metabolic process11Least InformativeInherited
Biological Process (BP)ion transport0.0000000000000016250Moderately InformativeDirect
Biological Process (BP)organic substance transport0.21290.2327Moderately InformativeInherited
Biological Process (BP)cellular response to chemical stimulus0.57471Moderately InformativeInherited
Biological Process (BP)organic cyclic compound biosynthetic process0.95020.0000002452Moderately InformativeInherited
Biological Process (BP)cellular macromolecule biosynthetic process0.55840.07666Moderately InformativeInherited
Biological Process (BP)nitrogen compound transport0.080420.02301Moderately InformativeInherited
Biological Process (BP)single-organism transport11Moderately InformativeInherited
Biological Process (BP)aromatic compound biosynthetic process0.69510.000000004331Moderately InformativeInherited
Biological Process (BP)small molecule biosynthetic process0.83480.009645Moderately InformativeInherited
Biological Process (BP)heterocycle biosynthetic process0.85680.000001538Moderately InformativeInherited
Biological Process (BP)sulfur compound metabolic process0.017340.3544Moderately InformativeInherited
Biological Process (BP)organic acid transport0.000000028030.00000005543InformativeDirect
Biological Process (BP)cellular response to inorganic substance0.000049630.000006939InformativeDirect
Biological Process (BP)response to metal ion0.0061820.03843InformativeInherited
Biological Process (BP)pyrimidine-containing compound biosynthetic process0.00038440.01845InformativeInherited
Biological Process (BP)water-soluble vitamin biosynthetic process0.0022180.005354InformativeInherited
Biological Process (BP)sulfur compound biosynthetic process0.016850.2899InformativeInherited
Biological Process (BP)anion transport0.045380.9655InformativeInherited
Biological Process (BP)metal ion transport0.73320.4481InformativeInherited
Biological Process (BP)transition metal ion transport0.000000000021040.0001829Highly InformativeDirect
Biological Process (BP)amino acid transport0.00000010450.00000006317Highly InformativeDirect
Biological Process (BP)organic cation transport0.00000013890.00001132Highly InformativeDirect
Biological Process (BP)thiamine biosynthetic process0.0000001750.0000008324Highly InformativeDirect
Biological Process (BP)modified amino acid transport0.000063080.00003853Highly InformativeDirect
Biological Process (BP)response to iron ion0.000084810.0002283Highly InformativeDirect
Biological Process (BP)sulfur compound transport0.00015640.00001864Highly InformativeDirect
Biological Process (BP)ammonium transport0.0014450.008296Highly InformativeInherited
Molecular Function (MF)hydrolase activity0.00000000000017760.00001419Least InformativeDirect
Molecular Function (MF)binding11Least InformativeInherited
Molecular Function (MF)transporter activity00Moderately InformativeDirect
Molecular Function (MF)hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides00Moderately InformativeDirect
Molecular Function (MF)small molecule binding0.0025610.01166Moderately InformativeInherited
Molecular Function (MF)anion binding0.0019650.2393Moderately InformativeInherited
Molecular Function (MF)ATPase activity00InformativeDirect
Molecular Function (MF)hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances00InformativeDirect
Molecular Function (MF)P-P-bond-hydrolysis-driven transmembrane transporter activity00InformativeDirect
Molecular Function (MF)carboxylic acid binding0.0000029920InformativeDirect
Molecular Function (MF)anion transmembrane transporter activity0.000039071InformativeInherited
Molecular Function (MF)active ion transmembrane transporter activity0.00033881InformativeInherited
Molecular Function (MF)amino acid binding00.0000000000004903Highly InformativeDirect
Molecular Function (MF)ammonium ion binding0.0000000088610.0003377Highly InformativeDirect
Molecular Function (MF)amine transmembrane transporter activity0.00000008010.00004991Highly InformativeDirect
Molecular Function (MF)ATPase coupled ion transmembrane transporter activity0.34641Highly InformativeInherited
Cellular Component (CC)membrane10.00004155Least InformativeInherited
Cellular Component (CC)protein complex11Least InformativeInherited
Cellular Component (CC)intrinsic component of membrane0.1960Moderately InformativeInherited
Cellular Component (CC)membrane protein complex0.052811Moderately InformativeInherited
Cellular Component (CC)plasma membrane10Moderately InformativeInherited
Cellular Component (CC)transporter complex0.0000004910InformativeDirect
Cellular Component (CC)plasma membrane protein complex0.0000014320.782InformativeInherited
Cellular Component (CC)ATP-binding cassette (ABC) transporter complex0.0000000010020.000000007373Highly InformativeDirect
Cellular Component (CC)outer membrane-bounded periplasmic space0.000000028690.000000000001359Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) primary metabolic process 1 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) biological regulation 0.8765 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.042 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) response to stimulus 0.1125 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 1 Least Informative Inherited
Biological Process (BP) ion transport 0 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.000000004331 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.000001538 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.0000002452 Moderately Informative Direct
Biological Process (BP) single organism signaling 0.00000005884 Moderately Informative Direct
Biological Process (BP) cell communication 0.0000001794 Moderately Informative Direct
Biological Process (BP) regulation of macromolecule biosynthetic process 0.0000003178 Moderately Informative Direct
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 0.0000003767 Moderately Informative Direct
Biological Process (BP) regulation of cellular biosynthetic process 0.000004176 Moderately Informative Direct
Biological Process (BP) regulation of gene expression 0.00003642 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) RNA metabolic process 1 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.2327 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.9063 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 0.9065 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 1 Moderately Informative Inherited
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 0.2232 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 0.7492 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 0.4258 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) defense response 0.9552 Moderately Informative Inherited
Biological Process (BP) response to external stimulus 0.7661 Moderately Informative Inherited
Biological Process (BP) response to biotic stimulus 0.0666 Moderately Informative Inherited
Biological Process (BP) nitrogen compound transport 0.02301 Moderately Informative Inherited
Biological Process (BP) single-organism transport 1 Moderately Informative Inherited
Biological Process (BP) tissue development 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) animal organ development 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) small molecule biosynthetic process 0.009645 Moderately Informative Inherited
Biological Process (BP) sulfur compound metabolic process 0.3544 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 0.9384 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 0.07238 Moderately Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.07666 Moderately Informative Inherited
Biological Process (BP) gene expression 1 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) immune system process 1 Moderately Informative Inherited
Biological Process (BP) organic acid transport 0.00000005543 Informative Direct
Biological Process (BP) cellular response to inorganic substance 0.000006939 Informative Direct
Biological Process (BP) system process 0.00000000000009834 Informative Direct
Biological Process (BP) behavior 0.000000000001009 Informative Direct
Biological Process (BP) alpha-amino acid biosynthetic process 0.000000331 Informative Direct
Biological Process (BP) cell surface receptor signaling pathway 0.00003002 Informative Direct
Biological Process (BP) transcription, DNA-templated 0.00003721 Informative Direct
Biological Process (BP) tetrapyrrole metabolic process 0.00003808 Informative Direct
Biological Process (BP) cation homeostasis 0.00004164 Informative Direct
Biological Process (BP) response to acid chemical 0.000246 Informative Direct
Biological Process (BP) cellular response to oxygen-containing compound 0.0003164 Informative Direct
Biological Process (BP) response to nitrogen compound 0.1208 Informative Inherited
Biological Process (BP) response to metal ion 0.03843 Informative Inherited
Biological Process (BP) positive regulation of developmental process 1 Informative Inherited
Biological Process (BP) positive regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) negative regulation of signaling 0.701 Informative Inherited
Biological Process (BP) negative regulation of cell communication 0.7021 Informative Inherited
Biological Process (BP) embryo development 1 Informative Inherited
Biological Process (BP) animal organ morphogenesis 1 Informative Inherited
Biological Process (BP) negative regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) regulation of cell differentiation 1 Informative Inherited
Biological Process (BP) regulation of cell proliferation 1 Informative Inherited
Biological Process (BP) regulation of cytokine production 0.5136 Informative Inherited
Biological Process (BP) negative regulation of response to stimulus 1 Informative Inherited
Biological Process (BP) regulation of response to external stimulus 0.2776 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 1 Informative Inherited
Biological Process (BP) intracellular signal transduction 0.497 Informative Inherited
Biological Process (BP) defense response to other organism 1 Informative Inherited
Biological Process (BP) response to bacterium 0.03305 Informative Inherited
Biological Process (BP) cell development 1 Informative Inherited
Biological Process (BP) pyrimidine-containing compound biosynthetic process 0.01845 Informative Inherited
Biological Process (BP) water-soluble vitamin biosynthetic process 0.005354 Informative Inherited
Biological Process (BP) sulfur compound biosynthetic process 0.2899 Informative Inherited
Biological Process (BP) response to radiation 0.3056 Informative Inherited
Biological Process (BP) metal ion transport 0.4481 Informative Inherited
Biological Process (BP) anion transport 0.9655 Informative Inherited
Biological Process (BP) pigment metabolic process 0.006984 Informative Inherited
Biological Process (BP) immune response 1 Informative Inherited
Biological Process (BP) transition metal ion transport 0.0001829 Highly Informative Direct
Biological Process (BP) amino acid transport 0.00000006317 Highly Informative Direct
Biological Process (BP) organic cation transport 0.00001132 Highly Informative Direct
Biological Process (BP) thiamine biosynthetic process 0.0000008324 Highly Informative Direct
Biological Process (BP) modified amino acid transport 0.00003853 Highly Informative Direct
Biological Process (BP) response to iron ion 0.0002283 Highly Informative Direct
Biological Process (BP) sulfur compound transport 0.00001864 Highly Informative Direct
Biological Process (BP) cell-cell signaling 0 Highly Informative Direct
Biological Process (BP) response to amino acid 0 Highly Informative Direct
Biological Process (BP) nervous system process 0 Highly Informative Direct
Biological Process (BP) regulation of membrane potential 0 Highly Informative Direct
Biological Process (BP) single-organism behavior 0 Highly Informative Direct
Biological Process (BP) cellular response to acid chemical 0.00000000000002436 Highly Informative Direct
Biological Process (BP) second-messenger-mediated signaling 0.0000000006292 Highly Informative Direct
Biological Process (BP) cellular response to organonitrogen compound 0.000000002815 Highly Informative Direct
Biological Process (BP) imidazole-containing compound metabolic process 0.00000001509 Highly Informative Direct
Biological Process (BP) heme biosynthetic process 0.000003135 Highly Informative Direct
Biological Process (BP) negative regulation of response to external stimulus 0.00001405 Highly Informative Direct
Biological Process (BP) aromatic amino acid family biosynthetic process 0.0001857 Highly Informative Direct
Biological Process (BP) antimicrobial humoral response 0.0002195 Highly Informative Direct
Biological Process (BP) negative regulation of immune system process 0.1549 Highly Informative Inherited
Biological Process (BP) negative regulation of cell development 0.02865 Highly Informative Inherited
Biological Process (BP) negative regulation of cytokine production 0.01401 Highly Informative Inherited
Biological Process (BP) regulation of hemopoiesis 0.05881 Highly Informative Inherited
Biological Process (BP) embryonic organ development 0.5197 Highly Informative Inherited
Biological Process (BP) response to alcohol 0.02423 Highly Informative Inherited
Biological Process (BP) negative regulation of multi-organism process 0.001134 Highly Informative Inherited
Biological Process (BP) regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 0.02113 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to growth factor stimulus 0.1297 Highly Informative Inherited
Biological Process (BP) response to fungus 0.008685 Highly Informative Inherited
Biological Process (BP) ammonium transport 0.008296 Highly Informative Inherited
Biological Process (BP) divalent inorganic cation transport 0.08685 Highly Informative Inherited
Biological Process (BP) innate immune response 0.09581 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0.00001419 Least Informative Direct
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transporter activity 0 Moderately Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0 Moderately Informative Direct
Molecular Function (MF) nucleic acid binding 0.904 Moderately Informative Inherited
Molecular Function (MF) small molecule binding 0.01166 Moderately Informative Inherited
Molecular Function (MF) anion binding 0.2393 Moderately Informative Inherited
Molecular Function (MF) lyase activity 0.05387 Moderately Informative Inherited
Molecular Function (MF) metal ion binding 1 Moderately Informative Inherited
Molecular Function (MF) ATPase activity 0 Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0 Informative Direct
Molecular Function (MF) P-P-bond-hydrolysis-driven transmembrane transporter activity 0 Informative Direct
Molecular Function (MF) carboxylic acid binding 0 Informative Direct
Molecular Function (MF) transcription factor activity, sequence-specific DNA binding 0 Informative Direct
Molecular Function (MF) molecular transducer activity 0 Informative Direct
Molecular Function (MF) signal transducer activity 0 Informative Direct
Molecular Function (MF) passive transmembrane transporter activity 0.00000000001167 Informative Direct
Molecular Function (MF) hydro-lyase activity 0.00001858 Informative Direct
Molecular Function (MF) amide binding 0.0005021 Informative Direct
Molecular Function (MF) DNA binding 0.01563 Informative Inherited
Molecular Function (MF) active ion transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) anion transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) monovalent inorganic cation transmembrane transporter activity 1 Informative Inherited
Molecular Function (MF) metal ion transmembrane transporter activity 0.8414 Informative Inherited
Molecular Function (MF) transferase activity, transferring alkyl or aryl (other than methyl) groups 0.002481 Informative Inherited
Molecular Function (MF) transferase activity, transferring glycosyl groups 0.1326 Informative Inherited
Molecular Function (MF) amino acid binding 0.0000000000004903 Highly Informative Direct
Molecular Function (MF) ammonium ion binding 0.0003377 Highly Informative Direct
Molecular Function (MF) amine transmembrane transporter activity 0.00004991 Highly Informative Direct
Molecular Function (MF) iron ion binding 0.0002583 Highly Informative Direct
Molecular Function (MF) ion channel activity 0 Highly Informative Direct
Molecular Function (MF) sodium ion transmembrane transporter activity 0.0000000000003019 Highly Informative Direct
Molecular Function (MF) transmembrane signaling receptor activity 0.0000004346 Highly Informative Direct
Molecular Function (MF) sequence-specific DNA binding 0.000002504 Highly Informative Direct
Molecular Function (MF) transferase activity, transferring pentosyl groups 0.000008959 Highly Informative Direct
Molecular Function (MF) transcription regulatory region DNA binding 0.00004021 Highly Informative Direct
Molecular Function (MF) peptide binding 0.0001332 Highly Informative Direct
Molecular Function (MF) double-stranded DNA binding 0.0002777 Highly Informative Direct
Molecular Function (MF) ATPase coupled ion transmembrane transporter activity 1 Highly Informative Inherited
Molecular Function (MF) protein domain specific binding 0.09549 Highly Informative Inherited
Molecular Function (MF) amino acid transmembrane transporter activity 0.01018 Highly Informative Inherited
Molecular Function (MF) inorganic anion transmembrane transporter activity 0.3074 Highly Informative Inherited
Molecular Function (MF) gated channel activity 0.002959 Highly Informative Inherited
Cellular Component (CC) membrane 0.00004155 Least Informative Direct
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) intrinsic component of membrane 0 Moderately Informative Direct
Cellular Component (CC) plasma membrane 0 Moderately Informative Direct
Cellular Component (CC) cell projection 0.0002329 Moderately Informative Direct
Cellular Component (CC) membrane protein complex 1 Moderately Informative Inherited
Cellular Component (CC) vesicle 0.9493 Moderately Informative Inherited
Cellular Component (CC) endomembrane system 1 Moderately Informative Inherited
Cellular Component (CC) transporter complex 0 Informative Direct
Cellular Component (CC) protein-DNA complex 0.0000000000003284 Informative Direct
Cellular Component (CC) plasma membrane region 0.00000000003876 Informative Direct
Cellular Component (CC) neuron projection 0.000002048 Informative Direct
Cellular Component (CC) plasma membrane bounded cell projection part 0.09424 Informative Inherited
Cellular Component (CC) plasma membrane protein complex 0.782 Informative Inherited
Cellular Component (CC) secretory granule 0.04493 Informative Inherited
Cellular Component (CC) ATP-binding cassette (ABC) transporter complex 0.000000007373 Highly Informative Direct
Cellular Component (CC) outer membrane-bounded periplasmic space 0.000000000001359 Highly Informative Direct
Cellular Component (CC) receptor complex 0 Highly Informative Direct
Cellular Component (CC) intrinsic component of plasma membrane 0 Highly Informative Direct
Cellular Component (CC) dendrite 0.00000008893 Highly Informative Direct
Cellular Component (CC) presynapse 0.09866 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0.00008606Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Hydro-lyases1Moderately InformativeInherited
Enzyme Commission (EC)Transferring alkyl or aryl groups, other than meth1Moderately InformativeInherited
Enzyme Commission (EC)Acting on polysaccharides0InformativeDirect
Enzyme Commission (EC)Transferring other groups0.258InformativeInherited
Enzyme Commission (EC)Chorismate mutase0Highly InformativeDirect
Enzyme Commission (EC)Prephenate dehydratase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport0Least InformativeDirect
Biological processTranscription regulation0Moderately InformativeDirect
Biological processAmino-acid biosynthesis0Moderately InformativeDirect
Biological processIon transport0.0000000828Moderately InformativeDirect
Biological processProtein transport1Moderately InformativeInherited
Biological processCell wall biogenesis/degradation0.0000000000003641InformativeDirect
Biological processAromatic hydrocarbons catabolism0.0009047InformativeDirect
Biological processAmino-acid transport0Highly InformativeDirect
Biological processHistidine biosynthesis0Highly InformativeDirect
Biological processChlorophyll biosynthesis0Highly InformativeDirect
Biological processPorphyrin biosynthesis0Highly InformativeDirect
Biological processNodulation0Highly InformativeDirect
Biological processOsteogenesis0.0000008245Highly InformativeDirect
Biological processSugar transport0.0001755Highly InformativeDirect
Biological processHeme biosynthesis0.0003806Highly InformativeDirect
Biological processAromatic amino acid biosynthesis1Highly InformativeInherited
Cellular componentMembrane0.00006195Least InformativeDirect
Cellular componentCell junction0Moderately InformativeDirect
Cellular componentCell membrane0.000007647Moderately InformativeDirect
Cellular componentSynapse0InformativeDirect
Cellular componentPeriplasm0InformativeDirect
Cellular componentCell outer membrane0InformativeDirect
Cellular componentPostsynaptic cell membrane0Highly InformativeDirect
Coding sequence diversityRNA editing0.00002097Moderately InformativeDirect
DomainSignal0Least InformativeDirect
Molecular functionMagnesium0.000002852Least InformativeDirect
Molecular functionNucleotide-binding0.03517Least InformativeInherited
Molecular functionIron1Moderately InformativeInherited
Molecular functionMolybdenum0.0000186InformativeDirect
Molecular functionIron transport0Highly InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationRepressor0Moderately InformativeDirect
Post-translational modificationActivator0Moderately InformativeDirect
Post-translational modificationDNA-binding0Moderately InformativeDirect
Post-translational modificationReceptor0Moderately InformativeDirect
Post-translational modificationLyase0.000002993Moderately InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect
Post-translational modificationIon channel0InformativeDirect
Post-translational modificationLigand-gated ion channel0Highly InformativeDirect
Post-translational modificationGlycoprotein0.0008624Least InformativeDirect
Post-translational modificationPalmitate0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 83 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Periplasmic binding protein-like II domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 83 hidden Markov models representing the Periplasmic binding protein-like II superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]