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Ribosomal protein S5 domain 2-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ribosomal protein S5 domain 2-like [ 54210]
Superfamily:   Ribosomal protein S5 domain 2-like [ 54211] (12)
Families:   Translational machinery components [ 54212] (4)
  RNase P protein [ 54220]
  DNA gyrase/MutL, second domain [ 54224] (6)
  Hsp90 middle domain [ 102755]
  Ribonuclease PH domain 1-like [ 54229] (10)
  GHMP Kinase, N-terminal domain [ 54232] (6)
  Early switch protein XOL-1, N-terminal domain [ 89824]
  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC [ 89827]
  Imidazole glycerol phosphate dehydratase [ 102766]
  ATP-dependent protease Lon (La), catalytic domain [ 102769]
  YigZ N-terminal domain-like [ 102772] (2)
  Formaldehyde-activating enzyme, FAE [ 117795]


Superfamily statistics
Genomes (3,261) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 73,356 396,693 102
Proteins 66,488 358,007 93


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular nitrogen compound metabolic process0.00010980Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.00054080.0000002322Least InformativeDirect
Biological Process (BP)organonitrogen compound metabolic process0.6071Least InformativeInherited
Biological Process (BP)biosynthetic process0.12670.00002165Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis0.070940.001103Least InformativeInherited
Biological Process (BP)primary metabolic process0.069410Least InformativeInherited
Biological Process (BP)peptide metabolic process0.00000010650Moderately InformativeDirect
Biological Process (BP)gene expression0.00000000021960Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.00065090.00000003037Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process0.00000029170Moderately InformativeDirect
Biological Process (BP)macromolecular complex subunit organization0.0074450.000005455Moderately InformativeInherited
Biological Process (BP)cellular component assembly0.07351Moderately InformativeInherited
Biological Process (BP)ribonucleoprotein complex subunit organization0.000015080InformativeDirect
Molecular Function (MF)structural molecule activity0.000000000000014440.0000000003662Moderately InformativeDirect
Cellular Component (CC)cytoplasmic part0.63791Least InformativeInherited
Cellular Component (CC)non-membrane-bounded organelle0.000000051720.4163Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.0011621Least InformativeInherited
Cellular Component (CC)ribosome0.0000000012280Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.00000000092630.0007592Moderately InformativeDirect
Cellular Component (CC)small ribosomal subunit0.000000000000010250InformativeDirect
Cellular Component (CC)cytosolic ribosome0.025610.5172InformativeInherited
Cellular Component (CC)cytosolic small ribosomal subunit0.00009890.00001672Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.00001614 Least Informative Direct
Biological Process (BP) biosynthetic process 0.00002165 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0000002322 Least Informative Direct
Biological Process (BP) primary metabolic process 0 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.000007678 Least Informative Direct
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.00004486 Least Informative Direct
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.9192 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.001103 Least Informative Inherited
Biological Process (BP) biological regulation 1 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0 Moderately Informative Direct
Biological Process (BP) organelle organization 0.000006633 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 0 Moderately Informative Direct
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) cellular response to stress 0.00006305 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000003037 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.000005455 Moderately Informative Direct
Biological Process (BP) anatomical structure morphogenesis 1 Moderately Informative Inherited
Biological Process (BP) cell differentiation 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) cellular amino acid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.01647 Moderately Informative Inherited
Biological Process (BP) regulation of macromolecule biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 1 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.8702 Moderately Informative Inherited
Biological Process (BP) organic substance transport 1 Moderately Informative Inherited
Biological Process (BP) nitrogen compound transport 0.8668 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) response to external stimulus 1 Moderately Informative Inherited
Biological Process (BP) cell communication 1 Moderately Informative Inherited
Biological Process (BP) reproduction 1 Moderately Informative Inherited
Biological Process (BP) regulation of nucleobase-containing compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) protein complex biogenesis 1 Moderately Informative Inherited
Biological Process (BP) single-organism catabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of cellular biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of biological quality 1 Moderately Informative Inherited
Biological Process (BP) cellular component assembly 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.226 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.1801 Moderately Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.8545 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 1 Moderately Informative Inherited
Biological Process (BP) animal organ development 1 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 1 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 1 Moderately Informative Inherited
Biological Process (BP) organophosphate biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) multi-organism process 1 Moderately Informative Inherited
Biological Process (BP) lipid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) sulfur compound metabolic process 1 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cofactor metabolic process 1 Moderately Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0.8094 Moderately Informative Inherited
Biological Process (BP) immune system process 1 Moderately Informative Inherited
Biological Process (BP) RNA metabolic process 0.5126 Moderately Informative Inherited
Biological Process (BP) organic cyclic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) small molecule biosynthetic process 0.00785 Moderately Informative Inherited
Biological Process (BP) heterocycle biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) aromatic compound biosynthetic process 1 Moderately Informative Inherited
Biological Process (BP) monosaccharide metabolic process 0.000001349 Informative Direct
Biological Process (BP) DNA metabolic process 0.000000003158 Informative Direct
Biological Process (BP) isoprenoid metabolic process 0.000000005774 Informative Direct
Biological Process (BP) response to temperature stimulus 0 Informative Direct
Biological Process (BP) response to extracellular stimulus 0.0003808 Informative Direct
Biological Process (BP) posttranscriptional regulation of gene expression 0.0000001051 Informative Direct
Biological Process (BP) ncRNA processing 0.0001063 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 0.000000000389 Informative Direct
Biological Process (BP) cellular macromolecule catabolic process 0.00000008087 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0 Informative Direct
Biological Process (BP) alpha-amino acid biosynthetic process 0.00001864 Informative Direct
Biological Process (BP) cellular component morphogenesis 0.822 Informative Inherited
Biological Process (BP) growth 0.2797 Informative Inherited
Biological Process (BP) cell development 1 Informative Inherited
Biological Process (BP) generation of neurons 1 Informative Inherited
Biological Process (BP) negative regulation of cellular component organization 0.05755 Informative Inherited
Biological Process (BP) regulation of organelle organization 1 Informative Inherited
Biological Process (BP) regulation of catabolic process 0.02458 Informative Inherited
Biological Process (BP) negative regulation of cellular protein metabolic process 0.02978 Informative Inherited
Biological Process (BP) negative regulation of multicellular organismal process 1 Informative Inherited
Biological Process (BP) regulation of cytokine production 0.4905 Informative Inherited
Biological Process (BP) negative regulation of macromolecule biosynthetic process 1 Informative Inherited
Biological Process (BP) negative regulation of cellular biosynthetic process 1 Informative Inherited
Biological Process (BP) positive regulation of signal transduction 1 Informative Inherited
Biological Process (BP) response to organic cyclic compound 0.008552 Informative Inherited
Biological Process (BP) protein transport 0.4389 Informative Inherited
Biological Process (BP) transmembrane transport 0.968 Informative Inherited
Biological Process (BP) response to radiation 1 Informative Inherited
Biological Process (BP) regulation of cell cycle 0.5774 Informative Inherited
Biological Process (BP) chromosome organization 0.07179 Informative Inherited
Biological Process (BP) negative regulation of gene expression 0.01455 Informative Inherited
Biological Process (BP) single organism reproductive process 0.9915 Informative Inherited
Biological Process (BP) positive regulation of nucleobase-containing compound metabolic process 1 Informative Inherited
Biological Process (BP) regulation of phosphorylation 1 Informative Inherited
Biological Process (BP) cellular protein complex assembly 0.1938 Informative Inherited
Biological Process (BP) phosphorylation 1 Informative Inherited
Biological Process (BP) cellular carbohydrate metabolic process 1 Informative Inherited
Biological Process (BP) carbohydrate catabolic process 0.9481 Informative Inherited
Biological Process (BP) organic hydroxy compound biosynthetic process 0.08284 Informative Inherited
Biological Process (BP) positive regulation of gene expression 1 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 0.7803 Informative Inherited
Biological Process (BP) positive regulation of cellular protein metabolic process 0.8612 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 1 Informative Inherited
Biological Process (BP) cell cycle process 0.2073 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 1 Informative Inherited
Biological Process (BP) regulation of cellular amide metabolic process 0.002398 Informative Inherited
Biological Process (BP) organelle assembly 0.3902 Informative Inherited
Biological Process (BP) proteolysis 1 Informative Inherited
Biological Process (BP) response to nitrogen compound 0.8707 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 0.8685 Informative Inherited
Biological Process (BP) regulation of proteolysis 0.4814 Informative Inherited
Biological Process (BP) regulation of protein modification process 1 Informative Inherited
Biological Process (BP) regulation of cellular component biogenesis 0.6126 Informative Inherited
Biological Process (BP) ribosome biogenesis 0.02345 Informative Inherited
Biological Process (BP) central nervous system development 1 Informative Inherited
Biological Process (BP) tRNA metabolic process 0.901 Informative Inherited
Biological Process (BP) phospholipid metabolic process 0.0167 Informative Inherited
Biological Process (BP) aspartate family amino acid metabolic process 0.1121 Informative Inherited
Biological Process (BP) alcohol metabolic process 0.02918 Informative Inherited
Biological Process (BP) multicellular organism reproduction 1 Informative Inherited
Biological Process (BP) multi-organism reproductive process 1 Informative Inherited
Biological Process (BP) cellular response to DNA damage stimulus 0.1994 Informative Inherited
Biological Process (BP) response to oxidative stress 0.9714 Informative Inherited
Biological Process (BP) nuclear division 0.0002542 Highly Informative Direct
Biological Process (BP) RNA catabolic process 0 Highly Informative Direct
Biological Process (BP) protein folding 0.00000003434 Highly Informative Direct
Biological Process (BP) steroid biosynthetic process 0.000002277 Highly Informative Direct
Biological Process (BP) isoprenoid biosynthetic process 0.0000001015 Highly Informative Direct
Biological Process (BP) response to heat 0 Highly Informative Direct
Biological Process (BP) response to cold 0 Highly Informative Direct
Biological Process (BP) rRNA metabolic process 0.0000005385 Highly Informative Direct
Biological Process (BP) sterol metabolic process 0.000000004703 Highly Informative Direct
Biological Process (BP) cellular component disassembly 0.00000000002348 Highly Informative Direct
Biological Process (BP) negative regulation of protein complex assembly 0.000005317 Highly Informative Direct
Biological Process (BP) cellular response to extracellular stimulus 0.000001931 Highly Informative Direct
Biological Process (BP) cellular response to reactive oxygen species 0.0000009315 Highly Informative Direct
Biological Process (BP) ribosome assembly 0.0006898 Highly Informative Direct
Biological Process (BP) response to hydrogen peroxide 0.000008101 Highly Informative Direct
Biological Process (BP) regulation of generation of precursor metabolites and energy 0.0001443 Highly Informative Direct
Biological Process (BP) regulation of RNA stability 0.000001295 Highly Informative Direct
Biological Process (BP) regulation of transcription from RNA polymerase II promoter in response to stress 0.00001702 Highly Informative Direct
Biological Process (BP) response to estrogen 0 Highly Informative Direct
Biological Process (BP) alcohol biosynthetic process 0.0000927 Highly Informative Direct
Biological Process (BP) monosaccharide catabolic process 0.00002413 Highly Informative Direct
Biological Process (BP) response to antibiotic 0 Highly Informative Direct
Biological Process (BP) meiotic cell cycle 0.00006046 Highly Informative Direct
Biological Process (BP) imidazole-containing compound metabolic process 0.000002261 Highly Informative Direct
Biological Process (BP) mitochondrial gene expression 0 Highly Informative Direct
Biological Process (BP) secondary alcohol metabolic process 0.000009535 Highly Informative Direct
Biological Process (BP) regulation of reactive oxygen species biosynthetic process 0.0000000007813 Highly Informative Direct
Biological Process (BP) positive regulation of reactive oxygen species metabolic process 0.0000004456 Highly Informative Direct
Biological Process (BP) cell growth 0.1571 Highly Informative Inherited
Biological Process (BP) neuron development 0.9949 Highly Informative Inherited
Biological Process (BP) developmental growth involved in morphogenesis 0.1001 Highly Informative Inherited
Biological Process (BP) plasma membrane bounded cell projection organization 1 Highly Informative Inherited
Biological Process (BP) regulation of chromosome organization 0.1028 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to growth factor stimulus 0.03942 Highly Informative Inherited
Biological Process (BP) regulation of protein catabolic process 0.007274 Highly Informative Inherited
Biological Process (BP) negative regulation of cytokine production 0.01268 Highly Informative Inherited
Biological Process (BP) negative regulation of RNA metabolic process 1 Highly Informative Inherited
Biological Process (BP) cellular response to organonitrogen compound 0.1089 Highly Informative Inherited
Biological Process (BP) response to UV 0.003644 Highly Informative Inherited
Biological Process (BP) response to nutrient levels 1 Highly Informative Inherited
Biological Process (BP) positive regulation of cellular catabolic process 0.2491 Highly Informative Inherited
Biological Process (BP) regulation of cellular response to stress 0.003661 Highly Informative Inherited
Biological Process (BP) cellular response to abiotic stimulus 0.3087 Highly Informative Inherited
Biological Process (BP) negative regulation of catabolic process 0.009808 Highly Informative Inherited
Biological Process (BP) negative regulation of protein modification process 0.1246 Highly Informative Inherited
Biological Process (BP) negative regulation of phosphate metabolic process 0.08825 Highly Informative Inherited
Biological Process (BP) regeneration 0.01626 Highly Informative Inherited
Biological Process (BP) modification-dependent macromolecule catabolic process 1 Highly Informative Inherited
Biological Process (BP) response to endoplasmic reticulum stress 0.2212 Highly Informative Inherited
Biological Process (BP) cellular protein catabolic process 1 Highly Informative Inherited
Biological Process (BP) regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 0.01918 Highly Informative Inherited
Biological Process (BP) DNA recombination 0.6754 Highly Informative Inherited
Biological Process (BP) nuclear chromosome segregation 0.07768 Highly Informative Inherited
Biological Process (BP) nucleic acid phosphodiester bond hydrolysis 0.2599 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0 Least Informative Direct
Molecular Function (MF) binding 0.8366 Least Informative Inherited
Molecular Function (MF) transferase activity 1 Least Informative Inherited
Molecular Function (MF) structural molecule activity 0.0000000003662 Moderately Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.0000000003068 Moderately Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0 Moderately Informative Direct
Molecular Function (MF) isomerase activity 0.0000000000552 Moderately Informative Direct
Molecular Function (MF) small molecule binding 0.0000000107 Moderately Informative Direct
Molecular Function (MF) anion binding 0.000002085 Moderately Informative Direct
Molecular Function (MF) carbohydrate derivative binding 0.0000000000005107 Moderately Informative Direct
Molecular Function (MF) molecular function regulator 1 Moderately Informative Inherited
Molecular Function (MF) lyase activity 0.1225 Moderately Informative Inherited
Molecular Function (MF) nucleic acid binding 0.2 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 1 Moderately Informative Inherited
Molecular Function (MF) RNA binding 0.0000000000006129 Informative Direct
Molecular Function (MF) nuclease activity 0.000000000000001615 Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0.0003116 Informative Direct
Molecular Function (MF) purine nucleotide binding 0 Informative Direct
Molecular Function (MF) ribonucleotide binding 0 Informative Direct
Molecular Function (MF) purine ribonucleoside triphosphate binding 0 Informative Direct
Molecular Function (MF) macromolecular complex binding 0.1525 Informative Inherited
Molecular Function (MF) DNA binding 1 Informative Inherited
Molecular Function (MF) hydro-lyase activity 0.009644 Informative Inherited
Molecular Function (MF) phosphotransferase activity, alcohol group as acceptor 1 Informative Inherited
Molecular Function (MF) kinase activity 1 Informative Inherited
Molecular Function (MF) ATPase activity 1 Informative Inherited
Molecular Function (MF) peptidase activity, acting on L-amino acid peptides 0.8385 Informative Inherited
Molecular Function (MF) carbon-carbon lyase activity 0.01101 Informative Inherited
Molecular Function (MF) ATP binding 0.0000007671 Highly Informative Direct
Molecular Function (MF) translation factor activity, RNA binding 8.27e-16 Highly Informative Direct
Molecular Function (MF) carboxy-lyase activity 0.0000005903 Highly Informative Direct
Molecular Function (MF) protein domain specific binding 0.04484 Highly Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.0000001015 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.4163 Least Informative Inherited
Cellular Component (CC) protein complex 1 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 1 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.0007592 Moderately Informative Direct
Cellular Component (CC) nuclear part 1 Moderately Informative Inherited
Cellular Component (CC) intracellular organelle lumen 0.05862 Moderately Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0.00001231 Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) chromosome 0.1317 Informative Inherited
Cellular Component (CC) cytosolic ribosome 0.5172 Informative Inherited
Cellular Component (CC) mitochondrial small ribosomal subunit 0.00000000001731 Highly Informative Direct
Cellular Component (CC) cytosolic small ribosomal subunit 0.00001672 Highly Informative Direct
Cellular Component (CC) symplast 0.0004268 Highly Informative Direct
Cellular Component (CC) nuclear chromosome part 0.8896 Highly Informative Inherited
Cellular Component (CC) chromatin 0.9664 Highly Informative Inherited
Cellular Component (CC) receptor complex 0.2453 Highly Informative Inherited
Cellular Component (CC) cell-cell junction 0.2932 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Isomerases1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.03273Least InformativeInherited
Enzyme Commission (EC)Endoribonucleases producing 5'-phosphomonoesters0Moderately InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0Moderately InformativeDirect
Enzyme Commission (EC)Phosphotransferases with an alcohol group as accep0Moderately InformativeDirect
Enzyme Commission (EC)Hydro-lyases0Moderately InformativeDirect
Enzyme Commission (EC)Carboxy-lyases1Moderately InformativeInherited
Enzyme Commission (EC)Phosphoric monoester hydrolases1Moderately InformativeInherited
Enzyme Commission (EC)Sole sub-subclass for isomerases that do not belon1InformativeInherited
Enzyme Commission (EC)Aldehyde-lyases0.3584InformativeInherited
Enzyme Commission (EC)Endopeptidase La0Highly InformativeDirect
Enzyme Commission (EC)Homoserine kinase0Highly InformativeDirect
Enzyme Commission (EC)Polyribonucleotide nucleotidyltransferase0Highly InformativeDirect
Enzyme Commission (EC)Ribonuclease P0Highly InformativeDirect
Enzyme Commission (EC)Histidinol-phosphatase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processAmino-acid biosynthesis0Moderately InformativeDirect
Biological processDNA damage0Moderately InformativeDirect
Biological processLipid metabolism0.000000000001067Moderately InformativeDirect
Biological processCarbohydrate metabolism0.003092Moderately InformativeInherited
Biological processLipid biosynthesis0InformativeDirect
Biological processtRNA processing0InformativeDirect
Biological processProtein biosynthesis0InformativeDirect
Biological processStress response0InformativeDirect
Biological processDNA repair0.000001578InformativeDirect
Biological processSteroid metabolism0.04077InformativeInherited
Biological processLipid A biosynthesis0Highly InformativeDirect
Biological processHistidine biosynthesis0Highly InformativeDirect
Biological processIsoprene biosynthesis0Highly InformativeDirect
Biological processSterol biosynthesis0.00000000001201Highly InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentPeroxisome0.00004613InformativeDirect
Cellular componentExosome0Highly InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionMagnesium0Least InformativeDirect
Molecular functionGTP-binding0InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationHydrolase1Least InformativeInherited
Post-translational modificationNucleotidyltransferase0Moderately InformativeDirect
Post-translational modificationNuclease0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationKinase0Moderately InformativeDirect
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationLyase0.000000000004666Moderately InformativeDirect
Post-translational modificationProtease0.0001593Moderately InformativeDirect
Post-translational modificationIsomerase1Moderately InformativeInherited
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationEndonuclease0InformativeDirect
Post-translational modificationSerine protease0InformativeDirect
Post-translational modificationChaperone0InformativeDirect
Post-translational modificationTopoisomerase0Highly InformativeDirect
Post-translational modificationElongation factor0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 58 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein S5 domain 2-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 58 hidden Markov models representing the Ribosomal protein S5 domain 2-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]