SUPERFAMILY 1.75 HMM library and genome assignments server

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N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55480]
Superfamily:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55481]
Families:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55482]


Superfamily statistics
Genomes (660) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 980 2,601 1
Proteins 975 2,592 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00002288 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00005164 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0006303 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.0009904 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.0004008 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.02016 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.004542 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0.0000000003711 Moderately Informative Direct
Biological Process (BP) gene expression 0.0000002671 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.0000001096 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0.0000000003014 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.00000002943 Moderately Informative Direct
Biological Process (BP) cellular component disassembly 0.000000000005477 Highly Informative Direct
Molecular Function (MF) binding 0.001567 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 0.0000001288 Moderately Informative Direct
Molecular Function (MF) RNA binding 0.0000000001177 Informative Direct
Molecular Function (MF) translation factor activity, RNA binding 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processProtein biosynthesis0InformativeDirect
Biological processGrowth regulation0.000000000005187Highly InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]