SUPERFAMILY 1.75 HMM library and genome assignments server


N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55480]
Superfamily:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55481]
Families:   N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [ 55482]


Superfamily statistics
Genomes (643) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 935 1,218 1
Proteins 932 1,217 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular macromolecule metabolic process 0.01347 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.001605 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.001272 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.0631 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.008563 Least Informative Inherited
Biological Process (BP) gene expression 1.876e-05 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 1.076e-05 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 2.265e-06 Moderately Informative Direct
Biological Process (BP) cellular component disassembly 9.204e-12 Informative Direct
Biological Process (BP) cellular protein complex disassembly 3.722e-15 Highly Informative Direct
Molecular Function (MF) binding 0.1028 Least Informative Inherited
Molecular Function (MF) nucleic acid binding 3.659e-06 Moderately Informative Direct
Molecular Function (MF) RNA binding 1.727e-09 Informative Direct
Molecular Function (MF) translation factor activity, nucleic acid binding 0 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)leaf0Least InformativeDirect
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processProtein biosynthesis0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]