SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Carbon-nitrogen hydrolase superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Carbon-nitrogen hydrolase [ 56316]
Superfamily:   Carbon-nitrogen hydrolase [ 56317] (2)
Families:   Nitrilase [ 56318] (2)
  Carbamilase [ 64433] (2)


Superfamily statistics
Genomes (2,942) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 12,127 68,979 8
Proteins 12,018 68,467 8


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Molecular Function (MF)hydrolase activity0.000080330.00000000000005881Least InformativeDirect
Molecular Function (MF)hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds0.0000000000000053890InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular nitrogen compound metabolic process 0.0003758 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.000000342 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.9376 Least Informative Inherited
Biological Process (BP) primary metabolic process 1 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.6493 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.6256 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 0.06108 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.2857 Least Informative Inherited
Biological Process (BP) cofactor metabolic process 0.000001769 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 0.05709 Moderately Informative Inherited
Biological Process (BP) monocarboxylic acid metabolic process 0.02646 Moderately Informative Inherited
Biological Process (BP) cellular modified amino acid metabolic process 0.000002602 Informative Direct
Molecular Function (MF) hydrolase activity 0.00000000000005881 Least Informative Direct
Molecular Function (MF) lyase activity 0.03345 Moderately Informative Inherited
Molecular Function (MF) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0 Informative Direct
Molecular Function (MF) hydro-lyase activity 0.00000113 Informative Direct
Molecular Function (MF) ligase activity 0.02001 Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0.1417Least InformativeInherited
Enzyme Commission (EC)In linear amides0Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds0.000001222Moderately InformativeDirect
Enzyme Commission (EC)Carbon--nitrogen ligases with glutamine as amido-N0InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Cellular componentMembrane0Least InformativeDirect
Cellular componentCell membrane0Moderately InformativeDirect
Cellular componentCell inner membrane0InformativeDirect
Cellular componentGPI-anchor0.00001384InformativeDirect
DomainTransmembrane0Least InformativeDirect
Molecular functionNAD0.0009837Moderately InformativeDirect
Molecular functionCopper0.00007877InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationTransferase0.0001509Least InformativeDirect
Post-translational modificationAcyltransferase0InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR003010 SSF56317 Protein matches
Abstract

This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [PubMed7987228]. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [PubMed7987228].


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Carbon-nitrogen hydrolase domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Carbon-nitrogen hydrolase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]