SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Bcl-2 inhibitors of programmed cell death superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Toxins' membrane translocation domains [ 56836] (5)
Superfamily:   Bcl-2 inhibitors of programmed cell death [ 56854]
Families:   Bcl-2 inhibitors of programmed cell death [ 56855] (10)


Superfamily statistics
Genomes (146) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,243 3,727 29
Proteins 1,236 3,700 29


Functional annotation
General category Processes_IC
Detailed category Cell cycle, Apoptosis

Document:
Function annotation of SCOP domain superfamilies

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.0006339Least InformativeDirect
Disease Ontology (DO)nervous system disease0.505Least InformativeInherited
Disease Ontology (DO)hematologic cancer0.002923Moderately InformativeInherited
Disease Ontology (DO)disease by infectious agent0.003187Moderately InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type II disease0.005053Moderately InformativeInherited
Disease Ontology (DO)cell type cancer0.006509Moderately InformativeInherited
Disease Ontology (DO)connective tissue cancer0.0001952InformativeDirect
Disease Ontology (DO)carcinoma0.0002355InformativeDirect
Disease Ontology (DO)lymphoblastic leukemia0.04328InformativeInherited
Disease Ontology (DO)viral infectious disease0.08964InformativeInherited
Disease Ontology (DO)chronic lymphocytic leukemia0.000005684Highly InformativeDirect
Disease Ontology (DO)Graves' disease0.0001436Highly InformativeDirect
Disease Ontology (DO)osteosarcoma0.0002921Highly InformativeDirect

Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)hematopoietic system phenotype0.007371Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.00817Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.05453Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.1096Least InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.0003889Moderately InformativeDirect
Mammalian Phenotype (MP)neoplasm0.0029Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte physiology0.003408Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal brain morphology0.006453Moderately InformativeInherited
Mammalian Phenotype (MP)reproductive system phenotype0.01219Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology/development0.02852Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal mononuclear cell morphology0.03059Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood cell morphology0.03958Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.05394Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal renal/urinary system morphology0.06366Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell morphology0.1167Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell physiology0.2153Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal T cell differentiation0.00009668InformativeDirect
Mammalian Phenotype (MP)abnormal metencephalon morphology0.000146InformativeDirect
Mammalian Phenotype (MP)abnormal T cell physiology0.0008015InformativeDirect
Mammalian Phenotype (MP)abnormal internal female genitalia morphology0.0009605InformativeDirect
Mammalian Phenotype (MP)abnormal germ cell morphology0.003621InformativeInherited
Mammalian Phenotype (MP)abnormal mature B cell morphology0.004387InformativeInherited
Mammalian Phenotype (MP)abnormal renal corpuscle morphology0.005605InformativeInherited
Mammalian Phenotype (MP)abnormal B cell differentiation0.04607InformativeInherited
Mammalian Phenotype (MP)abnormal pre-B cell morphology0.000007967Highly InformativeDirect
Mammalian Phenotype (MP)absent gametes0.00002861Highly InformativeDirect
Mammalian Phenotype (MP)decreased mature B cell number0.0002139Highly InformativeDirect
Mammalian Phenotype (MP)abnormal autonomic nervous system morphology0.0006087Highly InformativeDirect
Mammalian Phenotype (MP)abnormal immune organ physiology0.01261Highly InformativeInherited

Document: MP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details) Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 13 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Bcl-2 inhibitors of programmed cell death domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 13 hidden Markov models representing the Bcl-2 inhibitors of programmed cell death superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Disease Ontology (DO) · Mouse Phenotype (MP) · Xenopus Anatomy (XA) · Internal database links ]