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Growth factor receptor domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Knottins (small inhibitors, toxins, lectins) [ 57015] (19)
Superfamily:   Growth factor receptor domain [ 57184]
Families:   Growth factor receptor domain [ 57185] (8)


Superfamily statistics
Genomes (365) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 40,160 103,232 28
Proteins 19,122 50,551 21


Functional annotation
General category Regulation
Detailed category Signal transduction

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0.0000008291Least InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0.00000622Moderately InformativeDirect
Enzyme Commission (EC)Receptor protein-tyrosine kinase0InformativeDirect
Enzyme Commission (EC)Furin0Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.06419Least InformativeInherited
Disease Ontology (DO)cell type cancer0.00442Moderately InformativeInherited
Disease Ontology (DO)hypersensitivity reaction type II disease0.008813Moderately InformativeInherited
Disease Ontology (DO)nervous system cancer0.113Moderately InformativeInherited
Disease Ontology (DO)benign neoplasm0.1199Moderately InformativeInherited
Disease Ontology (DO)urinary system cancer0.00007101InformativeDirect
Disease Ontology (DO)liver carcinoma0.0002286InformativeDirect
Disease Ontology (DO)malignant glioma0.0004293InformativeDirect
Disease Ontology (DO)organ system benign neoplasm0.07546InformativeInherited
Disease Ontology (DO)peripheral nervous system neoplasm0.3371InformativeInherited
Disease Ontology (DO)neurofibroma0.000001168Highly InformativeDirect
Disease Ontology (DO)skin hemangioma0.000008276Highly InformativeDirect
Disease Ontology (DO)primary thrombocytopenia0.00001012Highly InformativeDirect
Disease Ontology (DO)large intestine cancer0.00009452Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the cardiovascular system0.05837Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the skeletal system0.2572Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the respiratory system0.01378Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vasculature0.03567Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the vertebral column0.334Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of cardiovascular system physiology0.6546Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal vertebral morphology0.006039InformativeInherited
Phenotypic Abnormality (PA)Abnormal lung morphology0.8326InformativeInherited
Phenotypic Abnormality (PA)Abnormal aortic valve physiology0.3359Highly InformativeInherited

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cardiovascular system phenotype0.000001112Least InformativeDirect
Mammalian Phenotype (MP)growth/size/body region phenotype0.01378Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.08618Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype0.1299Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.2077Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.2254Least InformativeInherited
Mammalian Phenotype (MP)abnormal homeostasis0.6148Least InformativeInherited
Mammalian Phenotype (MP)limbs/digits/tail phenotype0.00000003515Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal skeleton morphology0.000001937Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system development0.00005106Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal craniofacial morphology0.00009831Moderately InformativeDirect
Mammalian Phenotype (MP)embryo phenotype0.0001967Moderately InformativeDirect
Mammalian Phenotype (MP)abnormal muscle morphology0.001178Moderately InformativeInherited
Mammalian Phenotype (MP)hearing/vestibular/ear phenotype0.001291Moderately InformativeInherited
Mammalian Phenotype (MP)integument phenotype0.001312Moderately InformativeInherited
Mammalian Phenotype (MP)respiratory system phenotype0.001335Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal somatic nervous system morphology0.003723Moderately InformativeInherited
Mammalian Phenotype (MP)lethality during fetal growth through weaning0.006002Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal blood vessel morphology0.02944Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal inflammatory response0.1166Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal digestive system morphology0.2078Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal brain morphology0.2592Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal heart morphology0.2601Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cardiovascular system physiology0.4257Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal renal/urinary system physiology1Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal lung morphology0.00000009747InformativeDirect
Mammalian Phenotype (MP)perinatal lethality0.00007053InformativeDirect
Mammalian Phenotype (MP)abnormal cochlear hair cell morphology0.002453InformativeInherited
Mammalian Phenotype (MP)abnormal gas homeostasis0.009135InformativeInherited
Mammalian Phenotype (MP)abnormal systemic artery morphology0.03187InformativeInherited
Mammalian Phenotype (MP)abnormal brain development0.134InformativeInherited
Mammalian Phenotype (MP)abnormal gland physiology0.245InformativeInherited
Mammalian Phenotype (MP)abnormal angiogenesis0.3824InformativeInherited
Mammalian Phenotype (MP)decreased cell proliferation0.3993InformativeInherited
Mammalian Phenotype (MP)abnormal hypaxial muscle morphology0.4207InformativeInherited
Mammalian Phenotype (MP)joint inflammation0.4636InformativeInherited
Mammalian Phenotype (MP)abnormal kidney physiology0.4833InformativeInherited
Mammalian Phenotype (MP)abnormal intestine morphology0.5876InformativeInherited
Mammalian Phenotype (MP)abnormal aorta tunica media morphology0.000007487Highly InformativeDirect
Mammalian Phenotype (MP)abnormal basement membrane morphology0.0000225Highly InformativeDirect
Mammalian Phenotype (MP)abnormal cardinal vein morphology0.0001174Highly InformativeDirect
Mammalian Phenotype (MP)abnormal body wall morphology0.0001624Highly InformativeDirect
Mammalian Phenotype (MP)cyanosis0.0002612Highly InformativeDirect
Mammalian Phenotype (MP)decreased organ of Corti supporting cell number0.0002726Highly InformativeDirect
Mammalian Phenotype (MP)aneurysm0.0005482Highly InformativeDirect
Mammalian Phenotype (MP)decreased quadriceps weight0.0006308Highly InformativeDirect
Mammalian Phenotype (MP)abnormal olfactory bulb development0.05688Highly InformativeInherited
Mammalian Phenotype (MP)abnormal heart development0.08528Highly InformativeInherited
Mammalian Phenotype (MP)arthritis0.1014Highly InformativeInherited
Mammalian Phenotype (MP)abnormal lung development0.2211Highly InformativeInherited
Mammalian Phenotype (MP)abnormal diaphragm morphology0.6285Highly InformativeInherited
Mammalian Phenotype (MP)abnormal cochlear inner hair cell morphology0.6311Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organ system morphology variant0.0001979Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.0007322Least InformativeDirect
Worm Phenotype (WP)cell development variant0.00235Least InformativeInherited
Worm Phenotype (WP)cell morphology variant0.02265Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.1291Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.1386Least InformativeInherited
Worm Phenotype (WP)larval lethal0.4571Least InformativeInherited
Worm Phenotype (WP)larval development variant0.7814Least InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.0001549Moderately InformativeDirect
Worm Phenotype (WP)metabolic pathway variant0.02291Moderately InformativeInherited
Worm Phenotype (WP)cell component morphology variant0.09608Moderately InformativeInherited
Worm Phenotype (WP)movement variant0.1502Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.1849Moderately InformativeInherited
Worm Phenotype (WP)body wall muscle sarcomere morphology variant0.00008424InformativeDirect
Worm Phenotype (WP)egg laying variant0.0001657InformativeDirect
Worm Phenotype (WP)male morphology variant0.000229InformativeDirect
Worm Phenotype (WP)protein degradation variant0.0003558InformativeDirect
Worm Phenotype (WP)neuronal outgrowth variant0.0004759InformativeDirect
Worm Phenotype (WP)mitochondria morphology variant0.0009681InformativeDirect
Worm Phenotype (WP)muscle cell physiology variant0.00316InformativeInherited
Worm Phenotype (WP)muscle attachment variant0.00000004582Highly InformativeDirect
Worm Phenotype (WP)molt variant0.0000001623Highly InformativeDirect
Worm Phenotype (WP)myopodia present0.0000003495Highly InformativeDirect
Worm Phenotype (WP)loss of left right asymmetry0.000009198Highly InformativeDirect
Worm Phenotype (WP)early larval lethal0.000009508Highly InformativeDirect
Worm Phenotype (WP)muscle arm development defective0.00002161Highly InformativeDirect
Worm Phenotype (WP)neuronal cell fate specification variant0.00003023Highly InformativeDirect
Worm Phenotype (WP)axon guidance variant0.00008809Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)planar polarity defective0.0002221InformativeDirect
Fly Phenotype (FP)cell polarity defective0.0002367InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)embryo0.00347Least InformativeInherited
Fly Anatomy (FA)larva0.13Least InformativeInherited
Fly Anatomy (FA)anatomical group0.2141Least InformativeInherited
Fly Anatomy (FA)multi-tissue structure0.2556Least InformativeInherited
Fly Anatomy (FA)organ system subdivision0.2944Least InformativeInherited
Fly Anatomy (FA)nervous system0.3345Least InformativeInherited
Fly Anatomy (FA)integumentary system0.4883Least InformativeInherited
Fly Anatomy (FA)adult0.5514Least InformativeInherited
Fly Anatomy (FA)somatic cell0.6618Least InformativeInherited
Fly Anatomy (FA)anterior-posterior subdivision of organism1Least InformativeInherited
Fly Anatomy (FA)non-connected developing system0.004298Moderately InformativeInherited
Fly Anatomy (FA)multi-cell-component structure0.01351Moderately InformativeInherited
Fly Anatomy (FA)developing embryonic structure0.01799Moderately InformativeInherited
Fly Anatomy (FA)acellular anatomical structure0.03975Moderately InformativeInherited
Fly Anatomy (FA)cell cluster organ0.06796Moderately InformativeInherited
Fly Anatomy (FA)adult nervous system0.07133Moderately InformativeInherited
Fly Anatomy (FA)sensory neuron0.08525Moderately InformativeInherited
Fly Anatomy (FA)peripheral nervous system0.0967Moderately InformativeInherited
Fly Anatomy (FA)central nervous system0.102Moderately InformativeInherited
Fly Anatomy (FA)sense organ0.1424Moderately InformativeInherited
Fly Anatomy (FA)gonad0.1527Moderately InformativeInherited
Fly Anatomy (FA)late embryo0.2478Moderately InformativeInherited
Fly Anatomy (FA)adult head0.2674Moderately InformativeInherited
Fly Anatomy (FA)ganglion0.295Moderately InformativeInherited
Fly Anatomy (FA)stem cell0.3676Moderately InformativeInherited
Fly Anatomy (FA)somatic precursor cell0.3759Moderately InformativeInherited
Fly Anatomy (FA)adult integumentary system0.7046Moderately InformativeInherited
Fly Anatomy (FA)tagmatic subdivision of integument0.7476Moderately InformativeInherited
Fly Anatomy (FA)integumentary specialisation0.00002285InformativeDirect
Fly Anatomy (FA)embryonic/larval tracheal system0.00022InformativeDirect
Fly Anatomy (FA)endocuticle0.0004975InformativeDirect
Fly Anatomy (FA)eye photoreceptor cell0.004868InformativeInherited
Fly Anatomy (FA)adult external head0.007525InformativeInherited
Fly Anatomy (FA)anatomical space0.007682InformativeInherited
Fly Anatomy (FA)primordium0.008101InformativeInherited
Fly Anatomy (FA)circulatory system0.02167InformativeInherited
Fly Anatomy (FA)muscle system0.02754InformativeInherited
Fly Anatomy (FA)male organism0.03534InformativeInherited
Fly Anatomy (FA)interneuron0.03685InformativeInherited
Fly Anatomy (FA)digestive system0.03931InformativeInherited
Fly Anatomy (FA)syncytium0.04237InformativeInherited
Fly Anatomy (FA)dorsal closure embryo0.05859InformativeInherited
Fly Anatomy (FA)ventral nerve cord0.07875InformativeInherited
Fly Anatomy (FA)extended germ band embryo0.0825InformativeInherited
Fly Anatomy (FA)presumptive embryonic/larval digestive system0.2269InformativeInherited
Fly Anatomy (FA)ipsilateral tract0.6677InformativeInherited
Fly Anatomy (FA)neuroblast0.7379InformativeInherited
Fly Anatomy (FA)hub cell0.0000009989Highly InformativeDirect
Fly Anatomy (FA)ventral nervous system0.000007194Highly InformativeDirect
Fly Anatomy (FA)adult heart0.00007797Highly InformativeDirect
Fly Anatomy (FA)photoreceptor cell R70.0001041Highly InformativeDirect
Fly Anatomy (FA)head mesoderm derived embryonic hemocyte0.0001103Highly InformativeDirect
Fly Anatomy (FA)ocellus0.0001616Highly InformativeDirect
Fly Anatomy (FA)embryonic cardioblast0.0003014Highly InformativeDirect
Fly Anatomy (FA)pigment cell0.0007327Highly InformativeDirect
Fly Anatomy (FA)neuroblast of ventral nerve cord primordium0.0007989Highly InformativeDirect
Fly Anatomy (FA)fascicle0.0009475Highly InformativeDirect
Fly Anatomy (FA)peptidergic neuron0.0009481Highly InformativeDirect
Fly Anatomy (FA)acute muscle0.00111Highly InformativeInherited
Fly Anatomy (FA)hindgut0.002818Highly InformativeInherited
Fly Anatomy (FA)presumptive embryonic/larval central nervous system0.1004Highly InformativeInherited

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)multi-tissue structure0.006893Least InformativeInherited
Zebrafish Anatomy (ZA)compound organ0.5496Least InformativeInherited
Zebrafish Anatomy (ZA)nervous system0.8323Least InformativeInherited
Zebrafish Anatomy (ZA)cardiovascular system0.01177Moderately InformativeInherited
Zebrafish Anatomy (ZA)portion of tissue0.0329Moderately InformativeInherited
Zebrafish Anatomy (ZA)sensory system0.7372Moderately InformativeInherited
Zebrafish Anatomy (ZA)skeletal element0.02644InformativeInherited
Zebrafish Anatomy (ZA)intramembranous bone0.00009522Highly InformativeDirect
Zebrafish Anatomy (ZA)lymph vessel0.0008936Highly InformativeDirect
Zebrafish Anatomy (ZA)lateral line system0.006979Highly InformativeInherited
Zebrafish Anatomy (ZA)ganglion0.02364Highly InformativeInherited

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)cavitated compound organ0.007852Least InformativeInherited
Xenopus ANatomical entity (XAN)nervous system0.09096Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk0.2029Least InformativeInherited
Xenopus ANatomical entity (XAN)tissue0.5584Least InformativeInherited
Xenopus ANatomical entity (XAN)embryo0.6909Least InformativeInherited
Xenopus ANatomical entity (XAN)multi-tissue structure0.0000009342Moderately InformativeDirect
Xenopus ANatomical entity (XAN)sensory system0.008266Moderately InformativeInherited
Xenopus ANatomical entity (XAN)ectoderm0.6673Moderately InformativeInherited
Xenopus ANatomical entity (XAN)viscus1Moderately InformativeInherited
Xenopus ANatomical entity (XAN)spinal cord0.000001892InformativeDirect
Xenopus ANatomical entity (XAN)anatomical space0.000001922InformativeDirect
Xenopus ANatomical entity (XAN)mesenchyme0.000003942InformativeDirect
Xenopus ANatomical entity (XAN)cardiovascular system0.00002124InformativeDirect
Xenopus ANatomical entity (XAN)mesoderm0.00007509InformativeDirect
Xenopus ANatomical entity (XAN)endoderm0.000174InformativeDirect
Xenopus ANatomical entity (XAN)neural plate0.01431InformativeInherited
Xenopus ANatomical entity (XAN)vestibuloauditory system0.01575InformativeInherited
Xenopus ANatomical entity (XAN)surface structure0.2321InformativeInherited
Xenopus ANatomical entity (XAN)tail0.307InformativeInherited
Xenopus ANatomical entity (XAN)tail tip0.00002407Highly InformativeDirect
Xenopus ANatomical entity (XAN)otic vesicle0.0001483Highly InformativeDirect
Xenopus ANatomical entity (XAN)notochord0.0001637Highly InformativeDirect
Xenopus ANatomical entity (XAN)hypochord0.0007196Highly InformativeDirect
Xenopus ANatomical entity (XAN)pronephric tubule0.003572Highly InformativeInherited
Xenopus ANatomical entity (XAN)neural plate border0.01382Highly InformativeInherited
Xenopus DEvelopment stage (XDE)embryonic stage0.0003413Moderately InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorus-containing groups0Least InformativeDirect
Enzyme Commission (EC)Hydrolases1Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.0000027Moderately InformativeDirect
Enzyme Commission (EC)Protein-tyrosine kinases0InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0.0000007422InformativeDirect
Enzyme Commission (EC)Receptor protein-tyrosine kinase0Highly InformativeDirect

Document: EC annotation of SCOP domains

InterPro annotation
Cross references IPR009030 SSF57184 Protein matches
Abstract

The growth factor receptor domain is a cysteine-rich region that is found in a variety of eukaryotic proteins that are involved in the mechanism of signal transduction by receptor tyrosine kinases. Proteins containing the growth factor receptor domain include the insulin-like growth factor-binding proteins (IGFBP) [PubMed11447105], the type-1 insulin-like growth-factor receptor (IGF-1R) [PubMed9690478], and the receptor protein-tyrosine kinase Erbb-3 (ErbB3) [PubMed12154198]. The general structure of the growth factor receptor domain is a disulphide-bound fold containing a beta-hairpin with two adjacent disulphides.

IGFBPs control the distribution, function and activity of insulin-like growth factors (IGFs) IGF-I and IGF-II, which are key regulators of cell proliferation, differentiation and transformation. All IGFBPs share a common domain organization, where the highest conservation is found in the N-terminal Cys-rich IGF-binding domain. The N-terminal domain contains 10-12 conserved cysteine residues.

IGF-1R is a member of the tyrosine-kinase receptor superfamily that is involved in both normal growth and development and malignant transformation. The Cys-rich domain is flanked by two L-domains, and together they contribute to hormone binding and ligand specificity, even though they do not bind ligand directly. The Cys-rich region is composed of eight disulphide-bonded modules, seven of which form a rod-shaped domain.

ErbB3 is a member of the epidermal growth factor receptor (EGFR) family of receptor tyrosine kinases. The extracellular region of ErbB3 is made up of two Cys-rich domains and two L-domains, arranged alternately. The two L-domains and the first Cys-rich domain are structurally homologous to those found in IGF-1R. The two Cys-rich domains are extended repeats of seven small disulphide-containing modules. A beta-hairpin loop extends from the first Cys-rich domain to contact the C-terminal portion of the second Cys-rich domain, creating a large pore structure.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 12 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Growth factor receptor domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 12 hidden Markov models representing the Growth factor receptor domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]