SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Complement control module/SCR domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Complement control module/SCR domain [ 57534]
Superfamily:   Complement control module/SCR domain [ 57535]
Families:   Complement control module/SCR domain [ 57536] (14)


Superfamily statistics
Genomes (176) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 31,786 84,109 82
Proteins 6,968 19,171 40


Functional annotation
General category Processes_EC
Detailed category Immune response

Document:
Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on peptide bonds (peptide hydrolases)0Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases0.4992Least InformativeInherited
Enzyme Commission (EC)Serine endopeptidases0.00000000000002461Moderately InformativeDirect
Enzyme Commission (EC)Peroxidases0.0000001466InformativeDirect
Enzyme Commission (EC)Complement subcomponent C1s0.00000000001393Highly InformativeDirect
Enzyme Commission (EC)Complement subcomponent C1r0.00000000001393Highly InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)nervous system disease0.06685Least InformativeInherited
Disease Ontology (DO)hematopoietic system disease0.0000001027Moderately InformativeDirect
Disease Ontology (DO)syndrome0.0006283Moderately InformativeDirect
Disease Ontology (DO)hypersensitivity reaction type II disease0.0006393Moderately InformativeDirect
Disease Ontology (DO)sensory system disease0.02053Moderately InformativeInherited
Disease Ontology (DO)urinary system disease0.02983Moderately InformativeInherited
Disease Ontology (DO)genetic disease0.07958Moderately InformativeInherited
Disease Ontology (DO)autosomal recessive disease0.01415InformativeInherited
Disease Ontology (DO)nephritis0.03024InformativeInherited
Disease Ontology (DO)degeneration of macula and posterior pole0.0000000002166Highly InformativeDirect

Document: DO annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of immune system physiology0.004583Moderately InformativeInherited
Phenotypic Abnormality (PA)Recurrent infections0.18InformativeInherited
Phenotypic Abnormality (PA)Recurrent Neisserial infections0.0000007596Highly InformativeDirect

Document: HP annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)immune system phenotype0.07241Least InformativeInherited
Mammalian Phenotype (MP)hematopoietic system phenotype0.2658Least InformativeInherited
Mammalian Phenotype (MP)nervous system phenotype0.7399Least InformativeInherited
Mammalian Phenotype (MP)cellular phenotype1Least InformativeInherited
Mammalian Phenotype (MP)abnormal immune system organ morphology0.01884Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal nervous system physiology0.7533Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte physiology0.9657Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal humoral immune response0.005222InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte migration0.00606InformativeInherited
Mammalian Phenotype (MP)abnormal innervation0.02344InformativeInherited
Mammalian Phenotype (MP)abnormal lymph node morphology0.1007InformativeInherited
Mammalian Phenotype (MP)abnormal lymph organ size0.1443InformativeInherited
Mammalian Phenotype (MP)biphasic excitatory postsynaptic current amplitude0.00000007302Highly InformativeDirect
Mammalian Phenotype (MP)abnormal complement pathway0.0000005428Highly InformativeDirect
Mammalian Phenotype (MP)short excitatory postsynaptic current rise time0.00001439Highly InformativeDirect
Mammalian Phenotype (MP)decreased excitatory postsynaptic current amplitude0.0001706Highly InformativeDirect
Mammalian Phenotype (MP)abnormal Purkinje cell innervation0.0002133Highly InformativeDirect
Mammalian Phenotype (MP)lymph node hypoplasia0.0006326Highly InformativeDirect
Mammalian Phenotype (MP)abnormal peripheral lymph node morphology0.02645Highly InformativeInherited
Mammalian Phenotype (MP)abnormal cellular extravasation0.04155Highly InformativeInherited
Mammalian Phenotype (MP)abnormal leukocyte adhesion0.05008Highly InformativeInherited
Mammalian Phenotype (MP)abnormal granulocyte physiology0.09604Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)general pace of development variant0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)retarded heterochronic variations0Least InformativeDirect
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)larval growth variant0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Moderately InformativeDirect

Document: WP annotation of SCOP domains

Fly Anatomy (FA)

(show details) Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details) Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus DEvelopment stage (XDE)post-embryonic stage0.5041Least InformativeInherited
Xenopus DEvelopment stage (XDE)premetamorphosis stage0.0422Highly InformativeInherited

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Hydrolases0Least InformativeDirect
Enzyme Commission (EC)Oxidoreductases0.4912Least InformativeInherited
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0Moderately InformativeDirect
Enzyme Commission (EC)Serine endopeptidases0.0000000000000318InformativeDirect
Enzyme Commission (EC)Acting on a peroxide as acceptor0.0000001338InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 35 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Complement control module/SCR domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 35 hidden Markov models representing the Complement control module/SCR domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]