SUPERFAMILY 1.75 HMM library and genome assignments server


Metallothionein superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Metallothionein [ 57867]
Superfamily:   Metallothionein [ 57868]
Families:   Metallothionein [ 57869] (2)


Superfamily statistics
Genomes (142) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 441 826 23
Proteins 438 774 23


Functional annotation
General category General
Detailed category Ion binding

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)response to stimulus00Least InformativeDirect
Biological Process (BP)single-organism cellular process00Least InformativeDirect
Biological Process (BP)regulation of metabolic process11Least InformativeInherited
Biological Process (BP)developmental process0.094631Least InformativeInherited
Biological Process (BP)multicellular organismal process0.23481Least InformativeInherited
Biological Process (BP)localization0.65610.9431Least InformativeInherited
Biological Process (BP)regulation of cellular process11Least InformativeInherited
Biological Process (BP)cellular component organization or biogenesis0.43341Least InformativeInherited
Biological Process (BP)protein metabolic process0.13290.3805Least InformativeInherited
Biological Process (BP)cellular macromolecule metabolic process0.3640.9087Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.25890.4402Least InformativeInherited
Biological Process (BP)single-organism metabolic process0.68780.4795Least InformativeInherited
Biological Process (BP)cellular response to chemical stimulus00Moderately InformativeDirect
Biological Process (BP)homeostatic process4.876e-114.98e-10Moderately InformativeDirect
Biological Process (BP)organic hydroxy compound metabolic process2.634e-063.366e-06Moderately InformativeDirect
Biological Process (BP)oxidation-reduction process1.11e-057.593e-06Moderately InformativeDirect
Biological Process (BP)ion transport9.886e-050.0002141Moderately InformativeDirect
Biological Process (BP)cellular lipid metabolic process0.00063770.0002913Moderately InformativeDirect
Biological Process (BP)organelle organization11Moderately InformativeInherited
Biological Process (BP)response to abiotic stimulus0.91771Moderately InformativeInherited
Biological Process (BP)regulation of signaling0.89091Moderately InformativeInherited
Biological Process (BP)regulation of cell communication0.00028440.01782Moderately InformativeInherited
Biological Process (BP)cellular localization0.72430.7808Moderately InformativeInherited
Biological Process (BP)regulation of molecular function0.84640.7706Moderately InformativeInherited
Biological Process (BP)positive regulation of cellular process0.0095960.2839Moderately InformativeInherited
Biological Process (BP)regulation of protein metabolic process6.679e-050.001664Moderately InformativeInherited
Biological Process (BP)positive regulation of metabolic process0.00011660.03441Moderately InformativeInherited
Biological Process (BP)cellular catabolic process0.014510.009361Moderately InformativeInherited
Biological Process (BP)regulation of gene expression0.0010950.2864Moderately InformativeInherited
Biological Process (BP)regulation of nitrogen compound metabolic process0.0010430.2779Moderately InformativeInherited
Biological Process (BP)regulation of cellular metabolic process0.015440.6062Moderately InformativeInherited
Biological Process (BP)cellular response to stress11Moderately InformativeInherited
Biological Process (BP)response to endogenous stimulus0.64040.7966Moderately InformativeInherited
Biological Process (BP)regulation of response to stimulus11Moderately InformativeInherited
Biological Process (BP)negative regulation of metabolic process11Moderately InformativeInherited
Biological Process (BP)negative regulation of cellular process11Moderately InformativeInherited
Biological Process (BP)regulation of biosynthetic process0.00077640.2421Moderately InformativeInherited
Biological Process (BP)regulation of multicellular organismal process0.87491Moderately InformativeInherited
Biological Process (BP)single-organism developmental process11Moderately InformativeInherited
Biological Process (BP)signal transduction11Moderately InformativeInherited
Biological Process (BP)response to organic substance11Moderately InformativeInherited
Biological Process (BP)cellular protein modification process0.0047690.05838Moderately InformativeInherited
Biological Process (BP)macromolecule localization0.00023470.002607Moderately InformativeInherited
Biological Process (BP)organic substance transport0.0017520.002208Moderately InformativeInherited
Biological Process (BP)regulation of cellular component organization4.795e-050.003502Moderately InformativeInherited
Biological Process (BP)cell differentiation2.96e-050.03347Moderately InformativeInherited
Biological Process (BP)nervous system development0.00016110.004631Moderately InformativeInherited
Biological Process (BP)regulation of developmental process0.51620.9119Moderately InformativeInherited
Biological Process (BP)organic substance catabolic process0.036550.02048Moderately InformativeInherited
Biological Process (BP)response to oxygen-containing compound11Moderately InformativeInherited
Biological Process (BP)response to inorganic substance00InformativeDirect
Biological Process (BP)cellular cation homeostasis00InformativeDirect
Biological Process (BP)regulation of growth00InformativeDirect
Biological Process (BP)regulation of nervous system development6.013e-112.902e-07InformativeDirect
Biological Process (BP)nucleocytoplasmic transport2.744e-105.341e-09InformativeDirect
Biological Process (BP)posttranscriptional regulation of gene expression8.793e-104.854e-07InformativeDirect
Biological Process (BP)steroid metabolic process1.645e-093.477e-09InformativeDirect
Biological Process (BP)regulation of cell development3.281e-094.505e-06InformativeDirect
Biological Process (BP)lipid catabolic process5.551e-091.978e-09InformativeDirect
Biological Process (BP)regulation of kinase activity7.775e-091.445e-06InformativeDirect
Biological Process (BP)metal ion transport9.452e-097.49e-07InformativeDirect
Biological Process (BP)regulation of cellular catabolic process1.18e-084.606e-07InformativeDirect
Biological Process (BP)positive regulation of phosphorus metabolic process1.294e-082.322e-06InformativeDirect
Biological Process (BP)energy derivation by oxidation of organic compounds2.201e-081.572e-08InformativeDirect
Biological Process (BP)chromosome organization2.33e-088.738e-05InformativeDirect
Biological Process (BP)regulation of response to external stimulus2.759e-081.576e-07InformativeDirect
Biological Process (BP)protein localization to organelle4.951e-083.649e-07InformativeDirect
Biological Process (BP)alcohol metabolic process5.624e-088.525e-08InformativeDirect
Biological Process (BP)negative regulation of nitrogen compound metabolic process1.152e-070.0005481InformativeDirect
Biological Process (BP)apoptotic process1.206e-071.285e-06InformativeDirect
Biological Process (BP)response to oxidative stress1.312e-076.835e-08InformativeDirect
Biological Process (BP)positive regulation of protein metabolic process1.32e-071.842e-05InformativeDirect
Biological Process (BP)regulation of protein phosphorylation1.349e-071.185e-05InformativeDirect
Biological Process (BP)regulation of intracellular protein kinase cascade1.577e-071.482e-05InformativeDirect
Biological Process (BP)intracellular signal transduction1.998e-071.447e-07InformativeDirect
Biological Process (BP)central nervous system development2.336e-077.095e-06InformativeDirect
Biological Process (BP)negative regulation of biosynthetic process2.455e-070.0008645InformativeDirect
Biological Process (BP)negative regulation of molecular function2.503e-079.795e-07InformativeDirect
Biological Process (BP)response to cytokine stimulus3.252e-075.199e-07InformativeDirect
Biological Process (BP)positive regulation of signal transduction5.273e-072.93e-05InformativeDirect
Biological Process (BP)regulation of hydrolase activity5.883e-076.484e-06InformativeDirect
Biological Process (BP)cellular response to endogenous stimulus8.659e-072.515e-05InformativeDirect
Biological Process (BP)positive regulation of catalytic activity8.815e-074.169e-05InformativeDirect
Biological Process (BP)cytoplasmic transport1.155e-064.883e-06InformativeDirect
Biological Process (BP)negative regulation of cell death1.804e-067.49e-07InformativeDirect
Biological Process (BP)regulation of apoptotic process2.5e-064.451e-05InformativeDirect
Biological Process (BP)protein transport2.596e-061.648e-05InformativeDirect
Biological Process (BP)regulation of anatomical structure size1.554e-058.776e-05InformativeDirect
Biological Process (BP)negative regulation of cellular component organization0.00024130.0004415InformativeDirect
Biological Process (BP)cellular membrane organization0.015090.008848InformativeInherited
Biological Process (BP)generation of neurons0.1140.3407InformativeInherited
Biological Process (BP)negative regulation of developmental process0.054330.3834InformativeInherited
Biological Process (BP)positive regulation of gene expression5.365e-070.002285InformativeInherited
Biological Process (BP)positive regulation of macromolecule biosynthetic process5.365e-070.002997InformativeInherited
Biological Process (BP)response to hormone stimulus0.0068720.005082InformativeInherited
Biological Process (BP)positive regulation of nitrogen compound metabolic process8.659e-070.00362InformativeInherited
Biological Process (BP)positive regulation of cellular biosynthetic process1.382e-060.004731InformativeInherited
Biological Process (BP)regulation of transcription from RNA polymerase II promoter2.455e-070.002942InformativeInherited
Biological Process (BP)negative regulation of cellular metabolic process9.366e-050.003659InformativeInherited
Biological Process (BP)regulation of anatomical structure morphogenesis0.0024030.001107InformativeInherited
Biological Process (BP)cellular response to oxygen-containing compound11InformativeInherited
Biological Process (BP)cellular response to metal ion00Highly InformativeDirect
Biological Process (BP)steroid catabolic process00Highly InformativeDirect
Biological Process (BP)superoxide metabolic process00Highly InformativeDirect
Biological Process (BP)negative regulation of cell development02.099e-13Highly InformativeDirect
Biological Process (BP)regulation of cellular response to growth factor stimulus3.099e-153.316e-11Highly InformativeDirect
Biological Process (BP)lysosome organization7.597e-150Highly InformativeDirect
Biological Process (BP)regulation of ERK1 and ERK2 cascade4.012e-149.486e-12Highly InformativeDirect
Biological Process (BP)negative regulation of neuron death4.567e-143.946e-13Highly InformativeDirect
Biological Process (BP)energy reserve metabolic process8.118e-142.163e-13Highly InformativeDirect
Biological Process (BP)regulation of cellular carbohydrate metabolic process9.469e-142.329e-12Highly InformativeDirect
Biological Process (BP)alcohol catabolic process5.095e-135.264e-14Highly InformativeDirect
Biological Process (BP)protein targeting to nucleus5.095e-132.563e-11Highly InformativeDirect
Biological Process (BP)negative regulation of cellular catabolic process7.032e-138.338e-14Highly InformativeDirect
Biological Process (BP)nuclear import7.032e-133.198e-11Highly InformativeDirect
Biological Process (BP)sterol metabolic process1.566e-121.964e-11Highly InformativeDirect
Biological Process (BP)regulation of neuron apoptotic process3.245e-121.268e-11Highly InformativeDirect
Biological Process (BP)protein localization to nucleus4.953e-121.377e-10Highly InformativeDirect
Biological Process (BP)activation of protein kinase activity6.318e-125.797e-10Highly InformativeDirect
Biological Process (BP)protein import1.352e-113.728e-10Highly InformativeDirect
Biological Process (BP)regulation of cell projection organization1.674e-111.909e-08Highly InformativeDirect
Biological Process (BP)transition metal ion transport1.797e-111.271e-11Highly InformativeDirect
Biological Process (BP)histone modification1.797e-111.725e-07Highly InformativeDirect
Biological Process (BP)glial cell differentiation2.281e-115.988e-13Highly InformativeDirect
Biological Process (BP)negative regulation of endopeptidase activity1.11e-101.279e-12Highly InformativeDirect
Biological Process (BP)positive regulation of MAPK cascade1.239e-102.89e-08Highly InformativeDirect
Biological Process (BP)response to hypoxia4.248e-101.852e-09Highly InformativeDirect
Biological Process (BP)MAPK cascade6.745e-104.04e-09Highly InformativeDirect
Biological Process (BP)regulation of cell morphogenesis1.044e-092.532e-07Highly InformativeDirect
Biological Process (BP)cytokine-mediated signaling pathway1.831e-096.524e-09Highly InformativeDirect
Biological Process (BP)regulation of protein stability3.304e-091.571e-09Highly InformativeDirect
Biological Process (BP)negative regulation of apoptotic process1.926e-082.553e-07Highly InformativeDirect
Biological Process (BP)negative regulation of RNA metabolic process2.998e-080.0003148Highly InformativeDirect
Biological Process (BP)regulation of cysteine-type endopeptidase activity involved in apoptotic process3.666e-081.862e-08Highly InformativeDirect
Biological Process (BP)negative regulation of cellular macromolecule biosynthetic process4.351e-080.0005104Highly InformativeDirect
Biological Process (BP)negative regulation of gene expression7.748e-080.0006967Highly InformativeDirect
Biological Process (BP)cellular response to reactive oxygen species4.202e-072.004e-07Highly InformativeDirect
Biological Process (BP)regulation of cellular component size1.777e-052.412e-05Highly InformativeDirect
Biological Process (BP)regulation of neuron differentiation0.20110.227Highly InformativeInherited
Biological Process (BP)regulation of response to nutrient levels11Highly InformativeInherited
Biological Process (BP)negative regulation of cell growth0.0017310.0004047Highly InformativeInherited
Biological Process (BP)regulation of developmental growth0.12290.33Highly InformativeInherited
Biological Process (BP)response to superoxide0.0083740.001891Highly InformativeInherited
Biological Process (BP)response to toxic substance0.88680.1313Highly InformativeInherited
Molecular Function (MF)binding00Least InformativeDirect
Molecular Function (MF)cation binding00Moderately InformativeDirect
Molecular Function (MF)enzyme regulator activity0.00015930.000219Moderately InformativeDirect
Molecular Function (MF)transition metal ion binding6.991e-128.677e-11InformativeDirect
Molecular Function (MF)enzyme activator activity6.155e-106.047e-09InformativeDirect
Molecular Function (MF)peptidase regulator activity1.837e-084.025e-11InformativeDirect
Molecular Function (MF)enzyme inhibitor activity9.655e-085.521e-10InformativeDirect
Molecular Function (MF)zinc ion binding01.562e-15Highly InformativeDirect
Molecular Function (MF)cysteine-type endopeptidase regulator activity involved in apoptotic process1.314e-150Highly InformativeDirect
Molecular Function (MF)protein kinase regulator activity1.479e-141.498e-12Highly InformativeDirect
Molecular Function (MF)cysteine-type endopeptidase inhibitor activity1.581e-130Highly InformativeDirect
Molecular Function (MF)drug binding5.56e-072.208e-07Highly InformativeDirect
Cellular Component (CC)intracellular membrane-bounded organelle00Least InformativeDirect
Cellular Component (CC)cytoplasmic part1.645e-093.129e-15Least InformativeDirect
Cellular Component (CC)vesicle0.048620.02836Moderately InformativeInherited
Cellular Component (CC)coated vesicle3.462e-112.206e-09InformativeDirect
Cellular Component (CC)synapse7.011e-095.711e-06InformativeDirect
Cellular Component (CC)perinuclear region of cytoplasm00Highly InformativeDirect
Cellular Component (CC)clathrin-coated vesicle6.018e-122.57e-10Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0 Least Informative Direct
Biological Process (BP) single-organism cellular process 0 Least Informative Direct
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) developmental process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) localization 0.9431 Least Informative Inherited
Biological Process (BP) regulation of cellular process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.3805 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 0.9087 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.4402 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.4795 Least Informative Inherited
Biological Process (BP) cellular response to chemical stimulus 0 Moderately Informative Direct
Biological Process (BP) homeostatic process 4.98e-10 Moderately Informative Direct
Biological Process (BP) organic hydroxy compound metabolic process 3.366e-06 Moderately Informative Direct
Biological Process (BP) oxidation-reduction process 7.593e-06 Moderately Informative Direct
Biological Process (BP) ion transport 0.0002141 Moderately Informative Direct
Biological Process (BP) cellular lipid metabolic process 0.0002913 Moderately Informative Direct
Biological Process (BP) organelle organization 1 Moderately Informative Inherited
Biological Process (BP) response to abiotic stimulus 1 Moderately Informative Inherited
Biological Process (BP) regulation of signaling 1 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 0.01782 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.7808 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.7706 Moderately Informative Inherited
Biological Process (BP) positive regulation of cellular process 0.2839 Moderately Informative Inherited
Biological Process (BP) regulation of protein metabolic process 0.001664 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.03441 Moderately Informative Inherited
Biological Process (BP) cellular catabolic process 0.009361 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.2864 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 0.2779 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.6062 Moderately Informative Inherited
Biological Process (BP) cellular response to stress 1 Moderately Informative Inherited
Biological Process (BP) response to endogenous stimulus 0.7966 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 1 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.2421 Moderately Informative Inherited
Biological Process (BP) regulation of multicellular organismal process 1 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) signal transduction 1 Moderately Informative Inherited
Biological Process (BP) response to organic substance 1 Moderately Informative Inherited
Biological Process (BP) cellular protein modification process 0.05838 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.002607 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.002208 Moderately Informative Inherited
Biological Process (BP) regulation of cellular component organization 0.003502 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.03347 Moderately Informative Inherited
Biological Process (BP) nervous system development 0.004631 Moderately Informative Inherited
Biological Process (BP) regulation of developmental process 0.9119 Moderately Informative Inherited
Biological Process (BP) organic substance catabolic process 0.02048 Moderately Informative Inherited
Biological Process (BP) response to oxygen-containing compound 1 Moderately Informative Inherited
Biological Process (BP) response to inorganic substance 0 Informative Direct
Biological Process (BP) cellular cation homeostasis 0 Informative Direct
Biological Process (BP) regulation of growth 0 Informative Direct
Biological Process (BP) regulation of nervous system development 2.902e-07 Informative Direct
Biological Process (BP) nucleocytoplasmic transport 5.341e-09 Informative Direct
Biological Process (BP) posttranscriptional regulation of gene expression 4.854e-07 Informative Direct
Biological Process (BP) steroid metabolic process 3.477e-09 Informative Direct
Biological Process (BP) regulation of cell development 4.505e-06 Informative Direct
Biological Process (BP) lipid catabolic process 1.978e-09 Informative Direct
Biological Process (BP) regulation of kinase activity 1.445e-06 Informative Direct
Biological Process (BP) metal ion transport 7.49e-07 Informative Direct
Biological Process (BP) regulation of cellular catabolic process 4.606e-07 Informative Direct
Biological Process (BP) positive regulation of phosphorus metabolic process 2.322e-06 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 1.572e-08 Informative Direct
Biological Process (BP) chromosome organization 8.738e-05 Informative Direct
Biological Process (BP) regulation of response to external stimulus 1.576e-07 Informative Direct
Biological Process (BP) protein localization to organelle 3.649e-07 Informative Direct
Biological Process (BP) alcohol metabolic process 8.525e-08 Informative Direct
Biological Process (BP) negative regulation of nitrogen compound metabolic process 0.0005481 Informative Direct
Biological Process (BP) apoptotic process 1.285e-06 Informative Direct
Biological Process (BP) response to oxidative stress 6.835e-08 Informative Direct
Biological Process (BP) positive regulation of protein metabolic process 1.842e-05 Informative Direct
Biological Process (BP) regulation of protein phosphorylation 1.185e-05 Informative Direct
Biological Process (BP) regulation of intracellular protein kinase cascade 1.482e-05 Informative Direct
Biological Process (BP) intracellular signal transduction 1.447e-07 Informative Direct
Biological Process (BP) central nervous system development 7.095e-06 Informative Direct
Biological Process (BP) negative regulation of biosynthetic process 0.0008645 Informative Direct
Biological Process (BP) negative regulation of molecular function 9.795e-07 Informative Direct
Biological Process (BP) response to cytokine stimulus 5.199e-07 Informative Direct
Biological Process (BP) positive regulation of signal transduction 2.93e-05 Informative Direct
Biological Process (BP) regulation of hydrolase activity 6.484e-06 Informative Direct
Biological Process (BP) cellular response to endogenous stimulus 2.515e-05 Informative Direct
Biological Process (BP) positive regulation of catalytic activity 4.169e-05 Informative Direct
Biological Process (BP) cytoplasmic transport 4.883e-06 Informative Direct
Biological Process (BP) negative regulation of cell death 7.49e-07 Informative Direct
Biological Process (BP) regulation of apoptotic process 4.451e-05 Informative Direct
Biological Process (BP) protein transport 1.648e-05 Informative Direct
Biological Process (BP) regulation of anatomical structure size 8.776e-05 Informative Direct
Biological Process (BP) negative regulation of cellular component organization 0.0004415 Informative Direct
Biological Process (BP) cellular membrane organization 0.008848 Informative Inherited
Biological Process (BP) cellular response to nitrogen compound 0.8572 Informative Inherited
Biological Process (BP) generation of neurons 0.3407 Informative Inherited
Biological Process (BP) negative regulation of developmental process 0.3834 Informative Inherited
Biological Process (BP) positive regulation of gene expression 0.002285 Informative Inherited
Biological Process (BP) positive regulation of macromolecule biosynthetic process 0.002997 Informative Inherited
Biological Process (BP) response to hormone stimulus 0.005082 Informative Inherited
Biological Process (BP) positive regulation of nitrogen compound metabolic process 0.00362 Informative Inherited
Biological Process (BP) positive regulation of cellular biosynthetic process 0.004731 Informative Inherited
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 0.002942 Informative Inherited
Biological Process (BP) negative regulation of cellular metabolic process 0.003659 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.001107 Informative Inherited
Biological Process (BP) cellular response to oxygen-containing compound 1 Informative Inherited
Biological Process (BP) cellular response to metal ion 0 Highly Informative Direct
Biological Process (BP) steroid catabolic process 0 Highly Informative Direct
Biological Process (BP) superoxide metabolic process 0 Highly Informative Direct
Biological Process (BP) negative regulation of cell development 2.099e-13 Highly Informative Direct
Biological Process (BP) regulation of cellular response to growth factor stimulus 3.316e-11 Highly Informative Direct
Biological Process (BP) lysosome organization 0 Highly Informative Direct
Biological Process (BP) regulation of ERK1 and ERK2 cascade 9.486e-12 Highly Informative Direct
Biological Process (BP) negative regulation of neuron death 3.946e-13 Highly Informative Direct
Biological Process (BP) energy reserve metabolic process 2.163e-13 Highly Informative Direct
Biological Process (BP) regulation of cellular carbohydrate metabolic process 2.329e-12 Highly Informative Direct
Biological Process (BP) alcohol catabolic process 5.264e-14 Highly Informative Direct
Biological Process (BP) protein targeting to nucleus 2.563e-11 Highly Informative Direct
Biological Process (BP) negative regulation of cellular catabolic process 8.338e-14 Highly Informative Direct
Biological Process (BP) nuclear import 3.198e-11 Highly Informative Direct
Biological Process (BP) sterol metabolic process 1.964e-11 Highly Informative Direct
Biological Process (BP) regulation of neuron apoptotic process 1.268e-11 Highly Informative Direct
Biological Process (BP) protein localization to nucleus 1.377e-10 Highly Informative Direct
Biological Process (BP) activation of protein kinase activity 5.797e-10 Highly Informative Direct
Biological Process (BP) protein import 3.728e-10 Highly Informative Direct
Biological Process (BP) regulation of cell projection organization 1.909e-08 Highly Informative Direct
Biological Process (BP) transition metal ion transport 1.271e-11 Highly Informative Direct
Biological Process (BP) histone modification 1.725e-07 Highly Informative Direct
Biological Process (BP) glial cell differentiation 5.988e-13 Highly Informative Direct
Biological Process (BP) negative regulation of endopeptidase activity 1.279e-12 Highly Informative Direct
Biological Process (BP) positive regulation of MAPK cascade 2.89e-08 Highly Informative Direct
Biological Process (BP) response to hypoxia 1.852e-09 Highly Informative Direct
Biological Process (BP) MAPK cascade 4.04e-09 Highly Informative Direct
Biological Process (BP) regulation of cell morphogenesis 2.532e-07 Highly Informative Direct
Biological Process (BP) cytokine-mediated signaling pathway 6.524e-09 Highly Informative Direct
Biological Process (BP) regulation of protein stability 1.571e-09 Highly Informative Direct
Biological Process (BP) negative regulation of apoptotic process 2.553e-07 Highly Informative Direct
Biological Process (BP) negative regulation of RNA metabolic process 0.0003148 Highly Informative Direct
Biological Process (BP) regulation of cysteine-type endopeptidase activity involved in apoptotic process 1.862e-08 Highly Informative Direct
Biological Process (BP) negative regulation of cellular macromolecule biosynthetic process 0.0005104 Highly Informative Direct
Biological Process (BP) negative regulation of gene expression 0.0006967 Highly Informative Direct
Biological Process (BP) cellular response to reactive oxygen species 2.004e-07 Highly Informative Direct
Biological Process (BP) regulation of cellular component size 2.412e-05 Highly Informative Direct
Biological Process (BP) negative regulation of cell growth 0.0004047 Highly Informative Direct
Biological Process (BP) regulation of neuron differentiation 0.227 Highly Informative Inherited
Biological Process (BP) regulation of response to nutrient levels 1 Highly Informative Inherited
Biological Process (BP) regulation of developmental growth 0.33 Highly Informative Inherited
Biological Process (BP) response to superoxide 0.001891 Highly Informative Inherited
Biological Process (BP) response to toxic substance 0.1313 Highly Informative Inherited
Molecular Function (MF) binding 0 Least Informative Direct
Molecular Function (MF) cation binding 0 Moderately Informative Direct
Molecular Function (MF) enzyme regulator activity 0.000219 Moderately Informative Direct
Molecular Function (MF) transition metal ion binding 8.677e-11 Informative Direct
Molecular Function (MF) enzyme activator activity 6.047e-09 Informative Direct
Molecular Function (MF) peptidase regulator activity 4.025e-11 Informative Direct
Molecular Function (MF) enzyme inhibitor activity 5.521e-10 Informative Direct
Molecular Function (MF) zinc ion binding 1.562e-15 Highly Informative Direct
Molecular Function (MF) cysteine-type endopeptidase regulator activity involved in apoptotic process 0 Highly Informative Direct
Molecular Function (MF) protein kinase regulator activity 1.498e-12 Highly Informative Direct
Molecular Function (MF) cysteine-type endopeptidase inhibitor activity 0 Highly Informative Direct
Molecular Function (MF) drug binding 2.208e-07 Highly Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0 Least Informative Direct
Cellular Component (CC) cytoplasmic part 3.129e-15 Least Informative Direct
Cellular Component (CC) vesicle 0.02836 Moderately Informative Inherited
Cellular Component (CC) coated vesicle 2.206e-09 Informative Direct
Cellular Component (CC) synapse 5.711e-06 Informative Direct
Cellular Component (CC) perinuclear region of cytoplasm 0 Highly Informative Direct
Cellular Component (CC) clathrin-coated vesicle 2.57e-10 Highly Informative Direct

Document: GO annotation of SCOP domains

Disease Ontology (DO)

(show details) Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)abnormal homeostasis0Least InformativeDirect
Mammalian Phenotype (MP)nervous system phenotype0Least InformativeDirect
Mammalian Phenotype (MP)mortality/aging0Least InformativeDirect
Mammalian Phenotype (MP)abnormal nervous system physiology0Moderately InformativeDirect
Mammalian Phenotype (MP)behavior/neurological phenotype0Moderately InformativeDirect
Mammalian Phenotype (MP)seizures0InformativeDirect
Mammalian Phenotype (MP)premature death0InformativeDirect
Mammalian Phenotype (MP)abnormal mineral homeostasis0InformativeDirect
Mammalian Phenotype (MP)abnormal behavioral response to xenobiotic0InformativeDirect
Mammalian Phenotype (MP)abnormal CNS glial cell morphology0Highly InformativeDirect
Mammalian Phenotype (MP)increased susceptibility to pharmacologically induced seizures0Highly InformativeDirect

Document: MP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionZinc1.298e-09Least InformativeDirect
Molecular functionCopper0InformativeDirect
Molecular functionCadmium0Highly InformativeDirect
Post-translational modificationAcetylation0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 18 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Metallothionein domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 18 hidden Markov models representing the Metallothionein superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Disease Ontology (DO) · Mouse Phenotype (MP) · UniProtKB KeyWords (KW) · Internal database links ]