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N-terminal coiled coil domain from apc superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Coiled coil proteins [ 57942] (7)
Fold:   Parallel coiled-coil [ 57943] (34)
Superfamily:   N-terminal coiled coil domain from apc [ 58050]
Families:   N-terminal coiled coil domain from apc [ 58051]


Superfamily statistics
Genomes (86) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 169 305 1
Proteins 169 305 1


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular component organization or biogenesis 0.0000002337 Least Informative Direct
Biological Process (BP) biological regulation 0.002376 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.1794 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.07439 Least Informative Inherited
Biological Process (BP) response to stimulus 0.01122 Least Informative Inherited
Biological Process (BP) regulation of signaling 0.0006682 Moderately Informative Direct
Biological Process (BP) cell differentiation 0.0007282 Moderately Informative Direct
Biological Process (BP) animal organ development 0.0005437 Moderately Informative Direct
Biological Process (BP) negative regulation of cellular process 0.0000002734 Moderately Informative Direct
Biological Process (BP) regulation of molecular function 0.0001124 Moderately Informative Direct
Biological Process (BP) protein complex biogenesis 0.0000001319 Moderately Informative Direct
Biological Process (BP) cell communication 0.01661 Moderately Informative Inherited
Biological Process (BP) macromolecular complex subunit organization 0.03021 Moderately Informative Inherited
Biological Process (BP) single organism signaling 0.001331 Moderately Informative Inherited
Biological Process (BP) regulation of response to stimulus 0.003112 Moderately Informative Inherited
Biological Process (BP) regulation of cell communication 0.001297 Moderately Informative Inherited
Biological Process (BP) cellular component assembly 0.1757 Moderately Informative Inherited
Biological Process (BP) movement of cell or subcellular component 0.000003651 Informative Direct
Biological Process (BP) cell surface receptor signaling pathway 0.000002146 Informative Direct
Biological Process (BP) negative regulation of cell communication 0.0001669 Informative Direct
Biological Process (BP) negative regulation of signaling 0.00008686 Informative Direct
Biological Process (BP) locomotion 0.000001356 Informative Direct
Biological Process (BP) cell development 0.00004568 Informative Direct
Biological Process (BP) negative regulation of response to stimulus 0.0002339 Informative Direct
Biological Process (BP) generation of neurons 0.00001055 Informative Direct
Biological Process (BP) localization of cell 0.00000001254 Informative Direct
Biological Process (BP) cell-cell signaling 0.0000007797 Highly Informative Direct
Biological Process (BP) neuron development 0.0000007251 Highly Informative Direct
Biological Process (BP) plasma membrane bounded cell projection organization 0.000001122 Highly Informative Direct
Molecular Function (MF) binding 0.05719 Least Informative Inherited
Cellular Component (CC) non-membrane-bounded organelle 0.00003298 Least Informative Direct
Cellular Component (CC) protein complex 0.00001118 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.001754 Least Informative Inherited
Cellular Component (CC) cytoskeleton 0.00000009352 Moderately Informative Direct
Cellular Component (CC) microtubule cytoskeleton 0.000000001891 Informative Direct
Cellular Component (CC) supramolecular polymer 0.00000002813 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processWnt signaling pathway0InformativeDirect
Cellular componentCytoplasm0.002382Least InformativeInherited
Cellular componentCytoskeleton0.00000000001631Moderately InformativeDirect
Cellular componentMicrotubule0.00000000000001472InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
Post-translational modificationPhosphoprotein0.000001835Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a N-terminal coiled coil domain from apc domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the N-terminal coiled coil domain from apc superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]