SUPERFAMILY 1.73 HMM library and genome assignments server


TGS-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (334)
  Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:   beta-Grasp (ubiquitin-like) [ 54235] (13)
  core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily:   TGS-like [ 81271] (2)
Families:   TGS domain [ 81270]
  G domain-linked domain [ 82583] (2)


Superfamily statistics
Genomes (1,230) UniProt 15.0 PDB chains (SCOP 1.73)
Domains 4,247 4,419 6
Proteins 4,247 4,419 6


Functional annotation
General category General
Detailed category Ligand binding

Function annotation of SCOP domain superfamilies
InterPro annotation
Cross references IPR012676 SSF81271 Protein matches
Abstract

The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine 3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [PubMed10447505]. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi).

TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role [PubMed10447505]. The TGS domain is possibly related to the ubiquitin-like and MoaD/ThiS superfamilies, and has some similarity to the alpha-L RNA-binding motif.

This entry represents TGS domain-containing proteins, as well as The C-terminal domain of bacterial and fungal YchF, a universally conserved GTPase whose function is unknown [PubMed12837776].


InterPro database

PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 5 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a TGS-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 5 hidden Markov models representing the TGS-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Internal database links ]