SUPERFAMILY 1.75 HMM library and genome assignments server

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Poly A polymerase C-terminal region-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Poly A polymerase C-terminal region-like [ 81890]
Superfamily:   Poly A polymerase C-terminal region-like [ 81891]
Families:   Poly A polymerase C-terminal region-like [ 81892] (2)


Superfamily statistics
Genomes (2,968) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,747 26,514 3
Proteins 4,736 26,446 3


Functional annotation
General category Information
Detailed category Transcription

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.000000676 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.000002461 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.0003032 Least Informative Direct
Biological Process (BP) primary metabolic process 0.000000000992 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.0000005422 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000001667 Least Informative Direct
Biological Process (BP) gene expression 0.0000000004184 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0.0000000001249 Moderately Informative Direct
Biological Process (BP) tRNA metabolic process 0 Informative Direct
Biological Process (BP) ncRNA processing 0.07943 Informative Inherited
Molecular Function (MF) transferase activity 0.000000001748 Least Informative Direct
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0.00000000000005021 Moderately Informative Direct
Molecular Function (MF) nucleotidyltransferase activity 0 Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.6791 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.1974 Least Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Nucleotidyltransferases0Least InformativeDirect
Enzyme Commission (EC)CCA tRNA nucleotidyltransferase0Highly InformativeDirect
Enzyme Commission (EC)[Protein-PII] uridylyltransferase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processtRNA processing0InformativeDirect
Biological processNitrogen fixation0.000000000000277InformativeDirect
Molecular functionMagnesium0Least InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionNickel0InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationNucleotidyltransferase0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Poly A polymerase C-terminal region-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Poly A polymerase C-terminal region-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]