SUPERFAMILY 1.75 HMM library and genome assignments server


Double Clp-N motif superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Double Clp-N motif [ 81922]
Superfamily:   Double Clp-N motif [ 81923]
Families:   Double Clp-N motif [ 81924] (2)


Superfamily statistics
Genomes (2,805) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 7,426 39,599 6
Proteins 7,335 39,212 6


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.006858 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.1111 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.007834 Least Informative Inherited
Biological Process (BP) nitrogen compound metabolic process 0.113 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.08207 Least Informative Inherited
Biological Process (BP) response to stimulus 0.01193 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.03037 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 1.1e-06 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 2.816e-05 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 5.459e-05 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 8.352e-05 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 8.806e-05 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.0006291 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.001272 Moderately Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 1.107e-10 Informative Direct
Biological Process (BP) nucleoside triphosphate metabolic process 1.552e-09 Informative Direct
Biological Process (BP) purine ribonucleoside metabolic process 4.343e-09 Informative Direct
Biological Process (BP) purine ribonucleotide metabolic process 7.688e-09 Informative Direct
Biological Process (BP) organonitrogen compound catabolic process 1.726e-08 Informative Direct
Biological Process (BP) organophosphate catabolic process 2.867e-07 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 6.709e-07 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 1.08e-06 Informative Direct
Biological Process (BP) nucleoside monophosphate catabolic process 1.794e-11 Highly Informative Direct
Biological Process (BP) purine ribonucleoside monophosphate metabolic process 6.489e-11 Highly Informative Direct
Biological Process (BP) ribonucleoside triphosphate catabolic process 4.556e-10 Highly Informative Direct
Biological Process (BP) purine nucleoside triphosphate catabolic process 5.017e-10 Highly Informative Direct
Biological Process (BP) purine ribonucleoside catabolic process 7.045e-10 Highly Informative Direct
Biological Process (BP) purine ribonucleotide catabolic process 8.122e-10 Highly Informative Direct
Biological Process (BP) purine ribonucleoside triphosphate metabolic process 8.624e-10 Highly Informative Direct
Biological Process (BP) response to heat 1.727e-09 Highly Informative Direct
Biological Process (BP) protein folding 4.571e-07 Highly Informative Direct
Molecular Function (MF) hydrolase activity 1.587e-06 Least Informative Direct
Molecular Function (MF) nucleoside-triphosphatase activity 1.126e-07 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0001253 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.243 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.1519 Least Informative Inherited
Cellular Component (CC) organelle envelope 1.184e-07 Moderately Informative Direct
Cellular Component (CC) plastid 1.045e-14 Informative Direct
Cellular Component (CC) chloroplast stroma 8.984e-15 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentPlastid7.862e-06Moderately InformativeDirect
Cellular componentChloroplast1.264e-08InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionATP-binding0Moderately InformativeDirect
Post-translational modificationChaperone0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Double Clp-N motif domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Double Clp-N motif superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]