SUPERFAMILY 1.75 HMM library and genome assignments server

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Double Clp-N motif superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Double Clp-N motif [ 81922]
Superfamily:   Double Clp-N motif [ 81923]
Families:   Double Clp-N motif [ 81924] (2)


Superfamily statistics
Genomes (2,807) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 7,437 39,599 6
Proteins 7,346 39,212 6


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) response to stimulus 0.006327 Least Informative Inherited
Biological Process (BP) response to abiotic stimulus 0.00005974 Moderately Informative Direct
Biological Process (BP) response to stress 0.02453 Moderately Informative Inherited
Biological Process (BP) response to temperature stimulus 0.00000213 Informative Direct
Biological Process (BP) response to heat 0.00000000001463 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.00000005468 Least Informative Direct
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0000000008585 Moderately Informative Direct
Molecular Function (MF) ATPase activity 0.000000000002965 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0002046 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.2054 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.07598 Least Informative Inherited
Cellular Component (CC) organelle envelope 0.000000239 Moderately Informative Direct
Cellular Component (CC) plastid 0.00000000000006921 Informative Direct
Cellular Component (CC) chloroplast stroma 0.00000000000002585 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
Cellular componentCytoplasm0.000000000000004493Least InformativeDirect
Cellular componentPlastid0.000003455Moderately InformativeDirect
Cellular componentChloroplast0.000000007034InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionATP-binding0Moderately InformativeDirect
Post-translational modificationChaperone0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Double Clp-N motif domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Double Clp-N motif superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]