SUPERFAMILY 1.75 HMM library and genome assignments server

Double Clp-N motif superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Double Clp-N motif [ 81922]
Superfamily:   Double Clp-N motif [ 81923]
Families:   Double Clp-N motif [ 81924] (2)


Superfamily statistics
Genomes (2,806) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 7,435 39,599 6
Proteins 7,344 39,212 6


Functional annotation
General category Processes_IC
Detailed category Protein modification

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) nitrogen compound metabolic process 0.1128 Least Informative Inherited
Biological Process (BP) single-organism metabolic process 0.1366 Least Informative Inherited
Biological Process (BP) response to stimulus 0.01223 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.1128 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.007524 Least Informative Inherited
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) protein metabolic process 0.03104 Least Informative Inherited
Biological Process (BP) cellular macromolecule metabolic process 1 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.008591 Least Informative Inherited
Biological Process (BP) nucleobase-containing small molecule metabolic process 0.000001586 Moderately Informative Direct
Biological Process (BP) single-organism catabolic process 0.00000261 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 0.00002921 Moderately Informative Direct
Biological Process (BP) organophosphate metabolic process 0.00006394 Moderately Informative Direct
Biological Process (BP) response to abiotic stimulus 0.00008525 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0001107 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.0006048 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 0.00185 Moderately Informative Inherited
Biological Process (BP) nucleoside monophosphate metabolic process 0.0000000003283 Informative Direct
Biological Process (BP) nucleoside triphosphate metabolic process 0.000000003493 Informative Direct
Biological Process (BP) purine ribonucleoside metabolic process 0.00000000893 Informative Direct
Biological Process (BP) purine ribonucleotide metabolic process 0.00000001508 Informative Direct
Biological Process (BP) organonitrogen compound catabolic process 0.00000001722 Informative Direct
Biological Process (BP) organophosphate catabolic process 0.0000002364 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 0.0000005678 Informative Direct
Biological Process (BP) nucleobase-containing compound catabolic process 0.0000009413 Informative Direct
Biological Process (BP) nucleoside monophosphate catabolic process 0.00000000001748 Highly Informative Direct
Biological Process (BP) ribonucleoside triphosphate catabolic process 0.0000000004464 Highly Informative Direct
Biological Process (BP) purine nucleoside triphosphate catabolic process 0.000000000491 Highly Informative Direct
Biological Process (BP) purine ribonucleoside catabolic process 0.0000000006893 Highly Informative Direct
Biological Process (BP) purine ribonucleotide catabolic process 0.0000000007943 Highly Informative Direct
Biological Process (BP) response to heat 0.000000001953 Highly Informative Direct
Biological Process (BP) protein folding 0.0000004534 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.000001623 Least Informative Direct
Molecular Function (MF) binding 0.6179 Least Informative Inherited
Molecular Function (MF) nucleoside-triphosphatase activity 0.0000001125 Informative Direct
Cellular Component (CC) cytoplasmic part 0.0001293 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.1106 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.228 Least Informative Inherited
Cellular Component (CC) organelle envelope 0.0000001285 Moderately Informative Direct
Cellular Component (CC) plastid 0.00000000000001464 Informative Direct
Cellular Component (CC) chloroplast stroma 0.000000000000008925 Highly Informative Direct

Document: GO annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processStress response0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Cellular componentPlastid0.000007862Moderately InformativeDirect
Cellular componentChloroplast0.00000001264InformativeDirect
DomainRepeat0Least InformativeDirect
DomainCoiled coil0Moderately InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionATP-binding0Moderately InformativeDirect
Post-translational modificationChaperone0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Double Clp-N motif domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Double Clp-N motif superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]