SUPERFAMILY 1.75 HMM library and genome assignments server


Polo-box domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Polo-box domain [ 82614]
Superfamily:   Polo-box domain [ 82615] (2)
Families:   Polo-box duplicated region [ 102856]
  Swapped Polo-box domain [ 82616]


Superfamily statistics
Genomes (371) Uniprot 2013_05 PDB chains (SCOP 1.75)
Domains 1,514 1,378 7
Proteins 882 802 4


Functional annotation
General category General
Detailed category Protein interaction

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism cellular process 3.176e-13 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 1.031e-12 Least Informative Direct
Biological Process (BP) regulation of cellular process 1.883e-11 Least Informative Direct
Biological Process (BP) protein metabolic process 2.459e-06 Least Informative Direct
Biological Process (BP) cellular macromolecule metabolic process 0.0002593 Least Informative Direct
Biological Process (BP) localization 0.3044 Least Informative Inherited
Biological Process (BP) response to stimulus 0.01726 Least Informative Inherited
Biological Process (BP) regulation of metabolic process 1 Least Informative Inherited
Biological Process (BP) multicellular organismal process 0.06797 Least Informative Inherited
Biological Process (BP) developmental process 0.2236 Least Informative Inherited
Biological Process (BP) regulation of cellular component organization 4.032e-12 Moderately Informative Direct
Biological Process (BP) organelle organization 2.6e-11 Moderately Informative Direct
Biological Process (BP) phosphate-containing compound metabolic process 3.578e-09 Moderately Informative Direct
Biological Process (BP) cellular protein modification process 6.227e-09 Moderately Informative Direct
Biological Process (BP) positive regulation of cellular process 1.548e-06 Moderately Informative Direct
Biological Process (BP) cellular response to stress 2.041e-06 Moderately Informative Direct
Biological Process (BP) regulation of protein metabolic process 1.096e-05 Moderately Informative Direct
Biological Process (BP) macromolecule localization 0.0002823 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.2794 Moderately Informative Inherited
Biological Process (BP) cell differentiation 0.001285 Moderately Informative Inherited
Biological Process (BP) regulation of molecular function 0.3652 Moderately Informative Inherited
Biological Process (BP) cellular localization 0.1797 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 1 Moderately Informative Inherited
Biological Process (BP) negative regulation of cellular process 0.06172 Moderately Informative Inherited
Biological Process (BP) negative regulation of metabolic process 0.0214 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.02817 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.2407 Moderately Informative Inherited
Biological Process (BP) single-organism developmental process 1 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 0.03936 Moderately Informative Inherited
Biological Process (BP) regulation of gene expression 0.1829 Moderately Informative Inherited
Biological Process (BP) organ development 0.4857 Moderately Informative Inherited
Biological Process (BP) cell cycle process 0 Informative Direct
Biological Process (BP) microtubule-based process 0 Informative Direct
Biological Process (BP) protein phosphorylation 4.008e-15 Informative Direct
Biological Process (BP) regulation of cellular catabolic process 4.785e-10 Informative Direct
Biological Process (BP) regulation of apoptotic process 1.829e-09 Informative Direct
Biological Process (BP) positive regulation of cellular component organization 1.88e-09 Informative Direct
Biological Process (BP) negative regulation of cell death 8.253e-07 Informative Direct
Biological Process (BP) protein localization to organelle 1.157e-06 Informative Direct
Biological Process (BP) cellular component disassembly 1.845e-06 Informative Direct
Biological Process (BP) cytoskeleton organization 6.463e-06 Informative Direct
Biological Process (BP) regulation of organelle organization 6.8e-06 Informative Direct
Biological Process (BP) regulation of transcription from RNA polymerase II promoter 6.992e-06 Informative Direct
Biological Process (BP) positive regulation of protein metabolic process 9.743e-06 Informative Direct
Biological Process (BP) embryonic organ development 1.202e-05 Informative Direct
Biological Process (BP) regulation of cell cycle process 1.775e-05 Informative Direct
Biological Process (BP) negative regulation of nitrogen compound metabolic process 4.817e-05 Informative Direct
Biological Process (BP) negative regulation of biosynthetic process 0.0001214 Informative Direct
Biological Process (BP) chordate embryonic development 0.0001282 Informative Direct
Biological Process (BP) positive regulation of catalytic activity 0.0004365 Informative Direct
Biological Process (BP) negative regulation of cellular metabolic process 0.01917 Informative Inherited
Biological Process (BP) regulation of mitotic cell cycle 0.7036 Informative Inherited
Biological Process (BP) response to DNA damage stimulus 0.002078 Informative Inherited
Biological Process (BP) regulation of protein catabolic process 0 Highly Informative Direct
Biological Process (BP) microtubule cytoskeleton organization 0 Highly Informative Direct
Biological Process (BP) regulation of proteolysis 5.966e-15 Highly Informative Direct
Biological Process (BP) positive regulation of cell cycle process 7.835e-15 Highly Informative Direct
Biological Process (BP) nuclear division 8.675e-13 Highly Informative Direct
Biological Process (BP) negative regulation of apoptotic process 2.106e-12 Highly Informative Direct
Biological Process (BP) regulation of ligase activity 8.575e-11 Highly Informative Direct
Biological Process (BP) embryonic placenta development 2.816e-09 Highly Informative Direct
Biological Process (BP) regulation of protein ubiquitination 8.959e-09 Highly Informative Direct
Biological Process (BP) cell division 4.337e-07 Highly Informative Direct
Biological Process (BP) chromosome segregation 1.021e-06 Highly Informative Direct
Biological Process (BP) negative regulation of RNA metabolic process 7.768e-05 Highly Informative Direct
Biological Process (BP) cell cycle phase transition 8.283e-05 Highly Informative Direct
Biological Process (BP) negative regulation of gene expression 9.122e-05 Highly Informative Direct
Biological Process (BP) DNA damage checkpoint 0.000187 Highly Informative Direct
Biological Process (BP) negative regulation of cellular macromolecule biosynthetic process 0.0002698 Highly Informative Direct
Biological Process (BP) positive regulation of organelle organization 0.0003025 Highly Informative Direct
Biological Process (BP) mitotic cell cycle 0.0005538 Highly Informative Direct
Molecular Function (MF) transferase activity 0 Least Informative Direct
Molecular Function (MF) binding 0.116 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring phosphorus-containing groups 0 Moderately Informative Direct
Molecular Function (MF) protein binding 0.002168 Moderately Informative Inherited
Molecular Function (MF) kinase activity 0 Informative Direct
Molecular Function (MF) cytoskeletal protein binding 0.001262 Informative Inherited
Molecular Function (MF) tubulin binding 1.776e-07 Highly Informative Direct
Cellular Component (CC) intracellular non-membrane-bounded organelle 3.129e-15 Least Informative Direct
Cellular Component (CC) intracellular organelle part 1.1e-10 Least Informative Direct
Cellular Component (CC) protein complex 0.0001082 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.3763 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.9888 Least Informative Inherited
Cellular Component (CC) cytoskeleton 6.413e-11 Moderately Informative Direct
Cellular Component (CC) microtubule cytoskeleton 0 Informative Direct
Cellular Component (CC) chromosome 0.07901 Informative Inherited
Cellular Component (CC) microtubule organizing center 3.129e-15 Highly Informative Direct
Cellular Component (CC) midbody 1.227e-13 Highly Informative Direct
Cellular Component (CC) spindle 3.704e-09 Highly Informative Direct
Cellular Component (CC) kinetochore 7.956e-09 Highly Informative Direct

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Disease Ontology (DO)

(show details) Document: DO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)cellular phenotype0Least InformativeDirect
Mammalian Phenotype (MP)abnormal cell cycle0Highly InformativeDirect

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details) Document: WP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)central nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)sensory system0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferring phosphorous-containing groups0Least InformativeDirect
Enzyme Commission (EC)Protein-serine/threonine kinases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processCell cycle9.144e-13Moderately InformativeDirect
Biological processMitosis5.971e-09InformativeDirect
Cellular componentCytoplasm1.85e-10Least InformativeDirect
Cellular componentNucleus7.721e-08Least InformativeDirect
Cellular componentCytoskeleton0Moderately InformativeDirect
Cellular componentCell projection9.846e-07Moderately InformativeDirect
Cellular componentChromosome4.449e-06InformativeDirect
DiseaseTumor suppressor1.028e-10Moderately InformativeDirect
DomainRepeat6.464e-14Least InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationKinase0Moderately InformativeDirect
Post-translational modificationSerine/threonine-protein kinase0InformativeDirect
Post-translational modificationUbl conjugation0Moderately InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Polo-box domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the Polo-box domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · Disease Ontology (DO) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]