SUPERFAMILY 1.75 HMM library and genome assignments server


GAT-like domain superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Spectrin repeat-like [ 46965] (16)
Superfamily:   GAT-like domain [ 89009] (2)
Families:   GAT domain [ 89010] (3)
  Phosphoinositide-binding clathrin adaptor, domain 2 [ 100929] (2)


Superfamily statistics
Genomes (462) Uniprot 2014_06 PDB chains (SCOP 1.75)
Domains 3,815 0 11
Proteins 3,797 0 11


Functional annotation
General category Processes_IC
Detailed category Transport

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) localization 2.608e-09 Least Informative Direct
Biological Process (BP) regulation of metabolic process 0.3396 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.002536 Least Informative Inherited
Biological Process (BP) multicellular organismal process 1 Least Informative Inherited
Biological Process (BP) cellular component organization or biogenesis 0.1053 Least Informative Inherited
Biological Process (BP) regulation of protein metabolic process 1.638e-05 Moderately Informative Direct
Biological Process (BP) cellular localization 2.633e-11 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.01528 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 0.2212 Moderately Informative Inherited
Biological Process (BP) macromolecule localization 0.041 Moderately Informative Inherited
Biological Process (BP) organic substance transport 0.3561 Moderately Informative Inherited
Biological Process (BP) positive regulation of metabolic process 0.001389 Moderately Informative Inherited
Biological Process (BP) system process 0.0102 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.07764 Moderately Informative Inherited
Biological Process (BP) protein transport 1.052e-09 Informative Direct
Biological Process (BP) cellular membrane organization 5.32e-05 Informative Direct
Biological Process (BP) vesicle-mediated transport 5.659e-06 Informative Direct
Biological Process (BP) transmission of nerve impulse 0.0008042 Informative Direct
Biological Process (BP) cellular macromolecular complex assembly 0.0005451 Informative Direct
Biological Process (BP) protein localization to organelle 0.6328 Informative Inherited
Biological Process (BP) organelle localization 0.2609 Informative Inherited
Biological Process (BP) protein complex assembly 0.1547 Informative Inherited
Biological Process (BP) cell-cell signaling 0.006262 Informative Inherited
Biological Process (BP) cytoplasmic transport 1 Informative Inherited
Biological Process (BP) positive regulation of catabolic process 3.588e-05 Highly Informative Direct
Biological Process (BP) vesicle organization 2.843e-11 Highly Informative Direct
Biological Process (BP) regulation of protein catabolic process 0.0002387 Highly Informative Direct
Biological Process (BP) synaptic vesicle localization 7.462e-09 Highly Informative Direct
Biological Process (BP) establishment of protein localization to organelle 0.07267 Highly Informative Inherited
Biological Process (BP) establishment of vesicle localization 0.004482 Highly Informative Inherited
Molecular Function (MF) binding 0.0009334 Least Informative Direct
Molecular Function (MF) anion binding 3.382e-05 Moderately Informative Direct
Molecular Function (MF) lipid binding 3.652e-07 Informative Direct
Molecular Function (MF) phosphatidylinositol binding 0.02365 Highly Informative Inherited
Cellular Component (CC) membrane 0.0002343 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.0006137 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.659 Least Informative Inherited
Cellular Component (CC) intracellular non-membrane-bounded organelle 0.3861 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) endomembrane system 0.0001187 Moderately Informative Direct
Cellular Component (CC) vesicle 1.356e-06 Moderately Informative Direct
Cellular Component (CC) cytoskeleton 0.005008 Moderately Informative Inherited
Cellular Component (CC) endosome 0.0006688 Informative Direct
Cellular Component (CC) cell cortex 0.000218 Informative Direct
Cellular Component (CC) coated vesicle 3.72e-12 Informative Direct
Cellular Component (CC) synapse part 6.522e-05 Informative Direct
Cellular Component (CC) actin cytoskeleton 0.02779 Informative Inherited
Cellular Component (CC) trans-Golgi network 1.507e-07 Highly Informative Direct
Cellular Component (CC) coated pit 0 Highly Informative Direct
Cellular Component (CC) clathrin-coated vesicle 1.688e-13 Highly Informative Direct
Cellular Component (CC) cortical cytoskeleton 2.956e-05 Highly Informative Direct

Document: GO annotation of SCOP domains

Mouse Phenotype (MP)

(show details)
MP termFDR (all)SDMP levelAnnotation (direct or inherited)
Mammalian Phenotype (MP)growth/size/body phenotype0Least InformativeDirect
Mammalian Phenotype (MP)abnormal homeostasis0.05354Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.1406Least InformativeInherited
Mammalian Phenotype (MP)preweaning lethality0.06792Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal circulating glucose level0.001539InformativeInherited
Mammalian Phenotype (MP)lethality during fetal growth through weaning0.01531InformativeInherited
Mammalian Phenotype (MP)decreased birth weight8.489e-06Highly InformativeDirect
Mammalian Phenotype (MP)hypoglycemia1.036e-05Highly InformativeDirect
Mammalian Phenotype (MP)perinatal lethality0.05591Highly InformativeInherited

Document: MP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)growth variant0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Moderately InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)viable0Least InformativeDirect
Fly Phenotype (FP)fertile0Moderately InformativeDirect

Document: FP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)genital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Least InformativeDirect
Xenopus ANatomical entity (XAN)gonad0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)pollen tube cell0.0005217InformativeDirect
Plant structure DEvelopment stage (PDE)pollen development stage4.35e-05Moderately InformativeDirect
Plant structure DEvelopment stage (PDE)M germinated pollen stage2.036e-05InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport3.15e-11Least InformativeDirect
Biological processProtein transport0Moderately InformativeDirect
Biological processEndocytosis0InformativeDirect
Cellular componentMembrane0Least InformativeDirect
Cellular componentGolgi apparatus0Moderately InformativeDirect
Cellular componentEndosome0Moderately InformativeDirect
Cellular componentCytoplasmic vesicle0Moderately InformativeDirect
Cellular componentCoated pit0Highly InformativeDirect
Post-translational modificationPhosphoprotein7.175e-07Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 6 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a GAT-like domain domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 6 hidden Markov models representing the GAT-like domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]