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Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [ 101352]
Superfamily:   Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [ 101353]
Families:   Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [ 101354]


Superfamily statistics
Genomes (3,218) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 3,672 20,540 1
Proteins 3,662 20,507 1


Functional annotation
General category Metabolism
Detailed category Other enzymes

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) heterocycle metabolic process 0.0000000000002045 Least Informative Direct
Biological Process (BP) biosynthetic process 0.000000000000212 Least Informative Direct
Biological Process (BP) cellular aromatic compound metabolic process 0.0000000000002543 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000000000001011 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.000000000001874 Least Informative Direct
Biological Process (BP) single-organism metabolic process 0.00000000009531 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.0000000004643 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.000000001568 Least Informative Direct
Biological Process (BP) primary metabolic process 0.0000003216 Least Informative Direct
Biological Process (BP) single-organism cellular process 0.00009501 Least Informative Direct
Biological Process (BP) gene expression 0 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) peptide metabolic process 0 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) cellular amino acid metabolic process 0 Moderately Informative Direct
Biological Process (BP) tRNA metabolic process 0 Informative Direct
Molecular Function (MF) hydrolase activity 0.9751 Least Informative Inherited
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.0001113 Moderately Informative Direct
Molecular Function (MF) ligase activity 0 Informative Direct
Molecular Function (MF) carboxylic ester hydrolase activity 0.000000006467 Informative Direct
Cellular Component (CC) cytoplasmic part 0.02946 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.1724 Least Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Alanine--tRNA ligase0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processProtein biosynthesis0InformativeDirect
Cellular componentCytoplasm0Least InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionNucleotide-binding0Least InformativeDirect
Molecular functionZinc0Least InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationAminoacyl-tRNA synthetase0InformativeDirect
Post-translational modificationtRNA-binding0Highly InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]