SUPERFAMILY 1.75 HMM library and genome assignments server

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Chlorophyll a-b binding protein family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Membrane and cell surface proteins and peptides [ 56835] (58)
Fold:   Chlorophyll a-b binding protein [ 103510]
Superfamily:   Chlorophyll a-b binding protein [ 103511]
Family:   Chlorophyll a-b binding protein [ 103512]


Family statistics
Genomes (72) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,800 3,754 2
Proteins 1,771 3,682 2


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Least InformativeDirect
Enzyme Commission (EC)Sole sub-subclass for lyases that do not belong in1Highly InformativeInherited

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)plant embryo0.7437Least InformativeInherited
Plant ANatomical entity (PAN)portion of ground tissue0.0000000001334InformativeDirect
Plant ANatomical entity (PAN)fruit0.0000008284InformativeDirect
Plant ANatomical entity (PAN)vascular system0.0001644InformativeDirect
Plant ANatomical entity (PAN)chlorenchyma6.208e-16Highly InformativeDirect
Plant ANatomical entity (PAN)cortex6.208e-16Highly InformativeDirect
Plant ANatomical entity (PAN)shoot system vascular system0.00000005805Highly InformativeDirect
Plant ANatomical entity (PAN)stele0.0000000883Highly InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Lyases0Moderately InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 9 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Chlorophyll a-b binding protein domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]