SUPERFAMILY 1.75 HMM library and genome assignments server

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Rps17e-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   Rps17e-like [ 116820]
Families:   Rps17e-like [ 116821]


Superfamily statistics
Genomes (645) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 932 2,573 1
Proteins 932 2,568 1


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000001045 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00000299 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.00004273 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.00007689 Least Informative Direct
Biological Process (BP) primary metabolic process 0.0009914 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.004095 Least Informative Inherited
Biological Process (BP) amide biosynthetic process 0.0000000000004846 Moderately Informative Direct
Biological Process (BP) peptide metabolic process 0.000000000000635 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.000000001026 Moderately Informative Direct
Biological Process (BP) gene expression 0.00000000326 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.000005882 Moderately Informative Direct
Biological Process (BP) organelle organization 0.0005122 Moderately Informative Direct
Biological Process (BP) cellular component assembly 0.005328 Moderately Informative Inherited
Biological Process (BP) ribosome biogenesis 0.00000000002701 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0.0000000003947 Informative Direct
Biological Process (BP) organelle assembly 0.00000008951 Informative Direct
Biological Process (BP) ribosome assembly 0.00000515 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) cytoplasmic part 0.0000001525 Least Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.000006025 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.00816 Least Informative Inherited
Cellular Component (CC) ribosome 0.0000000000003246 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.0000000000007983 Moderately Informative Direct
Cellular Component (CC) small ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0 Informative Direct
Cellular Component (CC) cytosolic small ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Rps17e-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Rps17e-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]