SUPERFAMILY 1.75 HMM library and genome assignments server

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YaeB-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Multi-domain proteins (alpha and beta) [ 56572] (66)
Fold:   YaeB-like [ 118195]
Superfamily:   YaeB-like [ 118196]
Families:   YaeB-like [ 118197]


Superfamily statistics
Genomes (1,116) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,425 7,358 1
Proteins 1,374 7,273 1


Functional annotation
General category N_A
Detailed category not annotated

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.037540.003558Least InformativeInherited
Biological Process (BP)heterocycle metabolic process0.037930.003321Least InformativeInherited
Biological Process (BP)organic cyclic compound metabolic process0.053370.005525Least InformativeInherited
Biological Process (BP)macromolecule metabolic process0.082180.0504Least InformativeInherited
Biological Process (BP)primary metabolic process0.35250.2039Least InformativeInherited
Biological Process (BP)cellular nitrogen compound metabolic process0.056690.006728Least InformativeInherited
Biological Process (BP)RNA metabolic process0.00038950.00002174Moderately InformativeDirect
Biological Process (BP)gene expression0.0013510.00006105Moderately InformativeInherited
Biological Process (BP)tRNA metabolic process0.0000029850.0000000004426InformativeDirect
Biological Process (BP)RNA modification0.0000041330.00000000006018InformativeDirect
Biological Process (BP)ncRNA processing0.000011350.000000003364InformativeDirect
Biological Process (BP)tRNA modification0.00000047910.000000000001001Highly InformativeDirect
Biological Process (BP)macromolecule methylation0.0000023880.0000000004702Highly InformativeDirect
Molecular Function (MF)transferase activity0.053130.003103Least InformativeInherited
Molecular Function (MF)transferase activity, transferring one-carbon groups0.000030840.000000001279InformativeDirect
Molecular Function (MF)S-adenosylmethionine-dependent methyltransferase activity0.0000069810.0000000001074Highly InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) macromolecule metabolic process 0.0504 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.2039 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.003558 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.003321 Least Informative Inherited
Biological Process (BP) organic cyclic compound metabolic process 0.005525 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 0.006728 Least Informative Inherited
Biological Process (BP) gene expression 0.00006105 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0.00002174 Moderately Informative Direct
Biological Process (BP) tRNA metabolic process 0.0000000004426 Informative Direct
Biological Process (BP) RNA modification 0.00000000006018 Informative Direct
Biological Process (BP) ncRNA processing 0.000000003364 Informative Direct
Biological Process (BP) tRNA modification 0.000000000001001 Highly Informative Direct
Biological Process (BP) macromolecule methylation 0.0000000004702 Highly Informative Direct
Molecular Function (MF) transferase activity 0.003103 Least Informative Inherited
Molecular Function (MF) transferase activity, transferring one-carbon groups 0.000000001279 Informative Direct
Molecular Function (MF) S-adenosylmethionine-dependent methyltransferase activity 0.0000000001074 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processtRNA processing0.0000006871InformativeDirect
Molecular functionS-adenosyl-L-methionine0InformativeDirect
Post-translational modificationTransferase0.003811Least InformativeInherited
Post-translational modificationMethyltransferase0.000000000957InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a YaeB-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the YaeB-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]