SUPERFAMILY 1.75 HMM library and genome assignments server

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BSD domain-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   BSD domain-like [ 140382]
Superfamily:   BSD domain-like [ 140383]
Families:   BSD domain [ 140384] (2)


Superfamily statistics
Genomes (493) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 2,110 4,709 2
Proteins 1,751 3,915 2


Functional annotation
General category Other
Detailed category Unknown function

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) organic cyclic compound metabolic process 0.008878 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.08872 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.3418 Least Informative Inherited
Biological Process (BP) biosynthetic process 0.01882 Least Informative Inherited
Biological Process (BP) cellular aromatic compound metabolic process 0.005533 Least Informative Inherited
Biological Process (BP) heterocycle metabolic process 0.005136 Least Informative Inherited
Biological Process (BP) cellular nitrogen compound metabolic process 0.01093 Least Informative Inherited
Biological Process (BP) gene expression 0.0005106 Moderately Informative Direct
Biological Process (BP) RNA metabolic process 0.000332 Moderately Informative Direct
Biological Process (BP) heterocycle biosynthetic process 0.00008684 Moderately Informative Direct
Biological Process (BP) aromatic compound biosynthetic process 0.00005823 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.0002075 Moderately Informative Direct
Biological Process (BP) organic cyclic compound biosynthetic process 0.0001655 Moderately Informative Direct
Biological Process (BP) transcription, DNA-templated 0.00000006999 Informative Direct
Biological Process (BP) transcription from RNA polymerase II promoter 0.000000001615 Highly Informative Direct
Cellular Component (CC) protein complex 0.001338 Least Informative Inherited
Cellular Component (CC) intracellular organelle part 0.05108 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.145 Least Informative Inherited
Cellular Component (CC) nuclear part 0.0003859 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.0004311 Moderately Informative Direct
Cellular Component (CC) transferase complex 0.00000009668 Moderately Informative Direct
Cellular Component (CC) nucleoplasm part 0.00003106 Informative Direct
Cellular Component (CC) transferase complex, transferring phosphorus-containing groups 0.00000000004488 Informative Direct
Cellular Component (CC) RNA polymerase II transcription factor complex 0.00000000000005657 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDNA damage0.00000001393Moderately InformativeDirect
Biological processTranscription regulation0.00000003177Moderately InformativeDirect
Biological processDNA repair0.00000001094InformativeDirect
Cellular componentNucleus0.000001521Least InformativeDirect
DomainRepeat0.000003991Least InformativeDirect
Post-translational modificationPhosphoprotein0.000000001883Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a BSD domain-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 2 hidden Markov models representing the BSD domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]