SUPERFAMILY 1.75 HMM library and genome assignments server

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PUG domain-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   PUG domain-like [ 143502]
Superfamily:   PUG domain-like [ 143503]
Families:   PUG domain [ 143504]


Superfamily statistics
Genomes (317) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,248 2,783 3
Proteins 1,220 2,722 3


Functional annotation
General category General
Detailed category General

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) macromolecule metabolic process 0.0000001076 Least Informative Direct
Biological Process (BP) primary metabolic process 0.000006667 Least Informative Direct
Biological Process (BP) organonitrogen compound metabolic process 0.00000004188 Least Informative Direct
Biological Process (BP) cellular catabolic process 0.00000003117 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.0000109 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.00000006262 Moderately Informative Direct
Biological Process (BP) cellular macromolecule catabolic process 0.00000000009094 Informative Direct
Biological Process (BP) carbohydrate derivative catabolic process 0.00000001452 Informative Direct
Biological Process (BP) glycoprotein metabolic process 0.000000001141 Highly Informative Direct
Cellular Component (CC) cytoplasmic part 0.8532 Least Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)In linear amides0Moderately InformativeDirect
Enzyme Commission (EC)Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processUbl conjugation pathway0.0000000001779Moderately InformativeDirect
Cellular componentCytoplasm0.0001476Least InformativeDirect
Coding sequence diversityAlternative splicing0.0000207Least InformativeDirect
Molecular functionZinc0.00000000000158Least InformativeDirect
Molecular functionMetal-binding0.000001457Least InformativeDirect
Post-translational modificationHydrolase0.0001055Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a PUG domain-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the PUG domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]