SUPERFAMILY 1.75 HMM library and genome assignments server

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GINS helical bundle-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   GINS helical bundle-like [ 158572]
Superfamily:   GINS helical bundle-like [ 158573] (4)
Families:   PSF1 N-terminal domain-like [ 158574]
  PSF2 C-terminal domain-like [ 158577]
  PSF3 C-terminal domain-like [ 158580]
  SLD5 N-terminal domain-like [ 158583]


Superfamily statistics
Genomes (513) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 2,200 5,349 10
Proteins 2,194 5,318 10


Functional annotation
Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.00000000002642 Least Informative Direct
Biological Process (BP) biosynthetic process 0.0000000000211 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.0000000003223 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.000001015 Least Informative Direct
Biological Process (BP) primary metabolic process 0.0003366 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.00000000002016 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.0000000001493 Least Informative Direct
Biological Process (BP) single-organism cellular process 1 Least Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) mitotic cell cycle 0.0009018 Informative Direct
Biological Process (BP) DNA metabolic process 0 Informative Direct
Biological Process (BP) DNA replication 0 Highly Informative Direct
Molecular Function (MF) hydrolase activity 0.08473 Least Informative Inherited
Molecular Function (MF) hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.00006376 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00000004816 Least Informative Direct
Cellular Component (CC) intracellular membrane-bounded organelle 0.00001772 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.0000001534 Least Informative Direct
Cellular Component (CC) nuclear part 0.00000000004785 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.000000000000005967 Moderately Informative Direct
Cellular Component (CC) chromosome 0 Informative Direct
Cellular Component (CC) protein-DNA complex 0 Informative Direct
Cellular Component (CC) nucleoplasm part 0.00000000001937 Informative Direct
Cellular Component (CC) nuclear chromosome part 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processDNA replication0InformativeDirect
Biological processChromosome partition0Highly InformativeDirect
Cellular componentNucleus0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a GINS helical bundle-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the GINS helical bundle-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]