SUPERFAMILY 1.75 HMM library and genome assignments server

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Rpp14/Pop5-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ferredoxin-like [ 54861] (59)
Superfamily:   Rnp2-like [ 160350]
Family:   Rpp14/Pop5-like [ 160351]


Family statistics
Genomes (23) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 23 45 2
Proteins 23 45 2


Gene Ontology (high-quality)

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show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular aromatic compound metabolic process0.0000032170.000000003598Least InformativeDirect
Biological Process (BP)cellular nitrogen compound metabolic process0.0000077910.00000001232Least InformativeDirect
Biological Process (BP)macromolecule metabolic process0.000014830.000000766Least InformativeDirect
Biological Process (BP)primary metabolic process0.0006050.00002405Least InformativeDirect
Biological Process (BP)heterocycle metabolic process0.0000030950.00000000314Least InformativeDirect
Biological Process (BP)organic cyclic compound metabolic process0.0000067160.000000008688Least InformativeDirect
Biological Process (BP)gene expression0.0000000041620.000000000001938Moderately InformativeDirect
Biological Process (BP)cellular component biogenesis0.00089760.0001822Moderately InformativeDirect
Biological Process (BP)nucleic acid metabolic process0.0000000034760.00000000001855Moderately InformativeDirect
Biological Process (BP)tRNA metabolic process0.000000000000055030InformativeDirect
Biological Process (BP)ribonucleoprotein complex biogenesis0.0000026020.00000001257InformativeDirect
Biological Process (BP)ncRNA processing0.00000000000058750InformativeDirect
Molecular Function (MF)hydrolase activity0.00012210.00000005658Least InformativeDirect
Molecular Function (MF)hydrolase activity, acting on ester bonds0.00000024850.0000000000006797Moderately InformativeDirect
Molecular Function (MF)nuclease activity0.000000000028540InformativeDirect
Molecular Function (MF)ribonuclease activity0.000000000001690Highly InformativeDirect
Cellular Component (CC)macromolecular complex0.00014660.000004014Least InformativeDirect
Cellular Component (CC)intracellular ribonucleoprotein complex0.00000001630.0000000000002312Moderately InformativeDirect
Cellular Component (CC)catalytic complex0.00000001040.0000000000002408Moderately InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) cellular aromatic compound metabolic process 0.000000003598 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00000001232 Least Informative Direct
Biological Process (BP) macromolecule metabolic process 0.000000766 Least Informative Direct
Biological Process (BP) primary metabolic process 0.00002405 Least Informative Direct
Biological Process (BP) heterocycle metabolic process 0.00000000314 Least Informative Direct
Biological Process (BP) organic cyclic compound metabolic process 0.000000008688 Least Informative Direct
Biological Process (BP) gene expression 0.000000000001938 Moderately Informative Direct
Biological Process (BP) cellular component biogenesis 0.0001822 Moderately Informative Direct
Biological Process (BP) nucleic acid metabolic process 0.00000000001855 Moderately Informative Direct
Biological Process (BP) tRNA metabolic process 0 Informative Direct
Biological Process (BP) ribonucleoprotein complex biogenesis 0.00000001257 Informative Direct
Biological Process (BP) ncRNA processing 0 Informative Direct
Molecular Function (MF) hydrolase activity 0.00000005658 Least Informative Direct
Molecular Function (MF) hydrolase activity, acting on ester bonds 0.0000000000006797 Moderately Informative Direct
Molecular Function (MF) nuclease activity 0 Informative Direct
Molecular Function (MF) ribonuclease activity 0 Highly Informative Direct
Cellular Component (CC) macromolecular complex 0.000004014 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.1619 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.005181 Least Informative Inherited
Cellular Component (CC) intracellular ribonucleoprotein complex 0.0000000000002312 Moderately Informative Direct
Cellular Component (CC) nuclear part 0.00006845 Moderately Informative Direct
Cellular Component (CC) catalytic complex 0.0000000000002408 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.003693 Moderately Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Acting on ester bonds0Least InformativeDirect
Enzyme Commission (EC)Endoribonucleases producing 5'-phosphomonoesters0InformativeDirect
Enzyme Commission (EC)Ribonuclease P0Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processtRNA processing0InformativeDirect
Cellular componentCytoplasm0.0004411Least InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationEndonuclease0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Rnp2-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]