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Ribosomal protein L10-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a+b) [ 53931] (376)
Fold:   Ferredoxin-like [ 54861] (59)
Superfamily:   Ribosomal protein L10-like [ 160369]
Families:   Ribosomal protein L10-like [ 160370]


Superfamily statistics
Genomes (3,238) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 4,591 21,177 3
Proteins 4,587 21,150 3


Functional annotation
Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)cellular nitrogen compound metabolic process0.04120.00001119Least InformativeInherited
Biological Process (BP)biosynthetic process0.14910.000008638Least InformativeInherited
Biological Process (BP)macromolecule metabolic process0.064390.001779Least InformativeInherited
Biological Process (BP)organonitrogen compound metabolic process0.31220.002093Least InformativeInherited
Biological Process (BP)primary metabolic process0.35710.05047Least InformativeInherited
Biological Process (BP)peptide metabolic process0.00024940Moderately InformativeDirect
Biological Process (BP)gene expression0.0004140.0000000000564Moderately InformativeDirect
Biological Process (BP)amide biosynthetic process0.00043790Moderately InformativeDirect
Biological Process (BP)cellular macromolecule biosynthetic process0.0023790.00000000006928Moderately InformativeInherited
Molecular Function (MF)structural molecule activity0.00020050Moderately InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.00047790.00000004623Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.3410.002128Least InformativeInherited
Cellular Component (CC)ribosome0.00008020Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.00039270.00000000002599Moderately InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.000008638 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.00001119 Least Informative Direct
Biological Process (BP) cellular component organization or biogenesis 0.4581 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 0.002093 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.05047 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.001779 Least Informative Inherited
Biological Process (BP) peptide metabolic process 0 Moderately Informative Direct
Biological Process (BP) gene expression 0.0000000000564 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00000000006928 Moderately Informative Direct
Biological Process (BP) amide biosynthetic process 0 Moderately Informative Direct
Biological Process (BP) macromolecular complex subunit organization 0.0006749 Moderately Informative Direct
Biological Process (BP) cellular component assembly 0.03195 Moderately Informative Inherited
Biological Process (BP) organelle organization 0.1502 Moderately Informative Inherited
Biological Process (BP) ribosome biogenesis 0.00000005037 Informative Direct
Biological Process (BP) organelle assembly 0.00004401 Informative Direct
Biological Process (BP) ribonucleoprotein complex subunit organization 0.00002282 Informative Direct
Biological Process (BP) ribosome assembly 0.0000006111 Highly Informative Direct
Molecular Function (MF) structural molecule activity 0 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00000004623 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.04864 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 0.9872 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.002128 Least Informative Inherited
Cellular Component (CC) ribosome 0 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.00000000002599 Moderately Informative Direct
Cellular Component (CC) intracellular organelle lumen 0.01143 Moderately Informative Inherited
Cellular Component (CC) mitochondrial ribosome 0.000000000000007429 Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) mitochondrial large ribosomal subunit 0 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L10-like domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Ribosomal protein L10-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]