SUPERFAMILY 1.75 HMM library and genome assignments server

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CHY zinc finger-like superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   CHY zinc finger-like [ 161218]
Superfamily:   CHY zinc finger-like [ 161219]
Families:   CHY zinc finger [ 161220]

Superfamily statistics
Genomes (645) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,660 4,044 1
Proteins 1,648 4,025 1

Functional annotation
Function annotation of SCOP domain superfamilies

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) organonitrogen compound metabolic process 0.1184 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.4293 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.1545 Least Informative Inherited
Biological Process (BP) cellular protein modification process 0.00351 Moderately Informative Inherited
Biological Process (BP) protein modification by small protein conjugation 0.000001117 Highly Informative Direct
Molecular Function (MF) transferase activity 0.01744 Least Informative Inherited
Molecular Function (MF) ubiquitin-like protein transferase activity 0.0000002216 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processUbl conjugation pathway0Moderately InformativeDirect
Cellular componentNucleus0.00000006371Least InformativeDirect
DomainZinc-finger0Moderately InformativeDirect
Molecular functionMetal-binding0Least InformativeDirect
Molecular functionZinc0Least InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a CHY zinc finger-like domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the CHY zinc finger-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]