SUPERFAMILY 1.75 HMM library and genome assignments server

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All alpha proteins class

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Folds:   Globin-like [ 46457] (2)
  Long alpha-hairpin [ 46556] (20)
  Type I dockerin domain [ 63445]
  LEM/SAP HeH motif [ 63450] (6)
  SOCS box-like [ 158234]
  RPB6/omega subunit-like [ 63561]
  KRAB domain (Kruppel-associated box) [ 109639]
  Cytochrome c [ 46625]
  DNA/RNA-binding 3-helical bundle [ 46688] (14)
  Another 3-helical bundle [ 81602] (5)
  RuvA C-terminal domain-like [ 46928] (9)
  S13-like H2TH domain [ 81297]
  Putative DNA-binding domain [ 46954]
  Spectrin repeat-like [ 46965] (16)
  immunoglobulin/albumin-binding domain-like [ 46996] (11)
  Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex [ 47004]
  ChaB-like [ 140375]
  Protozoan pheromone-like [ 47013] (2)
  Acyl-CoA binding protein-like [ 47026] (2)
  YqgQ-like [ 158378]
  Kix domain of CBP (creb binding protein) [ 47039]
  RAP domain-like [ 47044]
  VHP, Villin headpiece domain [ 47049]
  BSD domain-like [ 140382]
  TAF(II)230 TBP-binding fragment [ 47054]
  S15/NS1 RNA-binding domain [ 47059]
  Frizzled cysteine-rich domain [ 63500]
  T4 endonuclease V [ 47076]
  Fertilization protein [ 47081]
  PGBD-like [ 47089]
  HMG-box [ 47094]
  Histone-fold [ 47112]
  Open three-helical up-and-down bundle [ 47143] (7)
  beta-catenin-interacting protein ICAT [ 81729]
  DNA polymerase III theta subunit-like [ 116730]
  Four-helical up-and-down bundle [ 47161] (28)
  PTS-regulatory domain, PRD [ 63519]
  Ferritin-like [ 47239] (6)
  4-helical cytokines [ 47265]
  Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47322]
  Acyl carrier protein-like [ 47335] (3)
  Bromodomain-like [ 47363] (15)
  ROP-like [ 47379] (8)
  Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit [ 47390]
  Orange domain-like [ 158456]
  Soluble domain of poliovirus core protein 3a [ 89042]
  Transcription factor IIA (TFIIA), alpha-helical domain [ 47395]
  Ectatomin subunits [ 47400]
  Dimerisation interlock [ 47405] (4)
  lambda repressor-like DNA-binding domains [ 47412]
  Signal peptide-binding domain [ 47445]
  A DNA-binding domain in eukaryotic transcription factors [ 47453]
  HLH-like [ 47458] (2)
  HAMP domain-like [ 158471]
  EF Hand-like [ 47472] (4)
  CH domain-like [ 47575] (3)
  Domain of poly(ADP-ribose) polymerase [ 47586]
  SWIB/MDM2 domain [ 47591]
  Pre-protein crosslinking domain of SecA [ 81766]
  Ribbon-helix-helix [ 47597]
  GST C-terminal domain-like [ 47615]
  Methionine synthase domain-like [ 47643] (3)
  KaiA/RbsU domain [ 101214]
  STAT-like [ 47654] (6)
  N-cbl like [ 47667] (5)
  Replisome organizer (g39p helicase loader/inhibitor protein) [ 89063]
  Hypothetical protein YqbG [ 116914]
  DnaD domain-like [ 158498]
  C-terminal domain of B transposition protein [ 47680]
  HAND domain of the nucleosome remodeling ATPase ISWI [ 101223]
  N-terminal, cytoplasmic domain of anti-sigmaE factor RseA [ 89068]
  Anaphylotoxins (complement system) [ 47685]
  Cytochrome c oxidase subunit h [ 47693]
  Crustacean CHH/MIH/GIH neurohormone [ 81777]
  C-terminal domain of DFF45/ICAD (DFF-C domain) [ 81782]
  BH2638-like [ 158503]
  Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin [ 47698]
  p53 tetramerization domain [ 47718]
  Bcr-Abl oncoprotein oligomerization domain [ 69035]
  Domain of early E2A DNA-binding protein, ADDBP [ 47723]
  IHF-like DNA-binding proteins [ 47728]
  TraM-like [ 140580]
  CO dehydrogenase ISP C-domain like [ 47740]
  Protein HNS-dependent expression A; HdeA [ 47751]
  PABP domain-like [ 63569] (2)
  Chemotaxis receptor methyltransferase CheR, N-terminal domain [ 47756]
  Dcp2 domain-like [ 140585]
  Type III secretion system domain [ 140590]
  YugE-like [ 116921]
  PWI domain [ 101232]
  PAH2 domain [ 47761]
  Myosin phosphatase inhibitor 17kDa protein, CPI-17 [ 81789]
  XPC-binding domain [ 101237]
  DinB/YfiT-like putative metalloenzymes [ 109853]
  EspA/CesA-like [ 116926]
  NblA-like [ 109858]
  EF2947-like [ 140606]
  EB1 dimerisation domain-like [ 140611]
  SAM domain-like [ 47768] (16)
  Retroviral matrix proteins [ 47835]
  Flavivirus capsid protein C [ 101256]
  Hepatitis B viral capsid (hbcag) [ 47851]
  Apolipophorin-III [ 47856]
  Methenyltetrahydrofolate cyclohydrolase-like [ 101261]
  A middle domain of Talin 1 [ 109879]
  I/LWEQ domain [ 109884]
  RNA-binding protein She2p [ 116941]
  Hyaluronidase domain-like [ 140656] (3)
  YoaC-like [ 140669]
  Saposin-like [ 47861] (2)
  Annexin [ 47873]
  TAFH domain-like [ 158552]
  Transducin (alpha subunit), insertion domain [ 47894]
  Wiscott-Aldrich syndrome protein, WASP, C-terminal domain [ 47911]
  Left-handed superhelix [ 47916] (4)
  ATPD N-terminal domain-like [ 47927] (2)
  ERP29 C domain-like [ 47932] (2)
  Functional domain of the splicing factor Prp18 [ 47937]
  Retrovirus capsid protein, N-terminal core domain [ 47942]
  GINS helical bundle-like [ 158572]
  Jann4075-like [ 158586]
  Cyclin-like [ 47953]
  Arp2/3 complex 21 kDa subunit ARPC3 [ 69059]
  RNase III domain-like [ 69064]
  Ribosomal protein S7 [ 47972]
  post-AAA+ oligomerization domain-like [ 48018]
  PAP/OAS1 substrate-binding domain [ 81632]
  Anti-sigma factor AsiA [ 69069]
  Antibiotic binding domain of TipA-like multidrug resistance regulators [ 89081]
  Surp module (SWAP domain) [ 109904]
  YgfY-like [ 109909]
  Hypothetical protein YhaI [ 109914]
  Hypothetical protein At3g22680 [ 109919]
  SP0561-like [ 140682]
  RbcX-like [ 158614]
  YheA-like [ 158621]
  RPA2825-like [ 158633]
  ENT-like [ 158638]
  YfmB-like [ 140687]
  N-terminal domain of adenylylcyclase associated protein, CAP [ 101277]
  IpaD-like [ 140692]
  Iron-dependent repressor protein, dimerization domain [ 47978]
  Glutamyl tRNA-reductase dimerization domain [ 69074]
  GRIP domain [ 101282]
  BAR/IMD domain-like [ 116747]
  L27 domain [ 101287]
  Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain [ 109924]
  Phage replication organizer domain [ 140712]
  YejL-like [ 158650]
  Mediator hinge subcomplex-like [ 140717]
  DEATH domain [ 47985]
  GntR ligand-binding domain-like [ 48007]
  AF0941-like [ 140725]
  NusB-like [ 48012]
  YutG-like [ 101306]
  N-terminal domain of DnaB helicase [ 48023]
  Invasion protein A (SipA) , C-terminal actin binding domain [ 101311]
  MtlR-like [ 158667]
  Guanido kinase N-terminal domain [ 48033]
  Scaffolding protein gpD of bacteriophage procapsid [ 48044]
  Hemocyanin, N-terminal domain [ 48049]
  Sama2622-like [ 158674]
  Di-copper centre-containing domain [ 48055]
  DBL homology domain (DH-domain) [ 48064]
  LigA subunit of an aromatic-ring-opening dioxygenase LigAB [ 48075]
  RuBisCo LSMT C-terminal, substrate-binding domain [ 81821]
  Methyl-coenzyme M reductase alpha and beta chain C-terminal domain [ 48080]
  YcfC-like [ 101321]
  PA2201 C-terminal domain-like [ 140730]
  Rv1873-like [ 140735]
  RUN domain-like [ 140740]
  SipA N-terminal domain-like [ 140745]
  Transcription factor STAT-4 N-domain [ 48091]
  TerB-like [ 158681]
  Regulator of G-protein signaling, RGS [ 48096]
  SopE-like GEF domain [ 81831]
  Variable surface antigen VlsE [ 74747]
  YgfB-like [ 101326]
  Hypothetical protein MTH393 [ 101331]
  PG0816-like [ 140752]
  UraD-like [ 158693]
  Sec63 N-terminal domain-like [ 158701]
  Carbamoyl phosphate synthetase, large subunit connection domain [ 48107]
  Heme-dependent peroxidases [ 48112]
  Ribosomal protein L19 (L19e) [ 48139]
  PSPTO4464-like [ 158709]
  GatB/YqeY motif [ 89094]
  YfbU-like [ 116959]
  MG296-like [ 158714]
  Hypothetical protein MPN330 [ 116964]
  HD-domain/PDEase-like [ 109603]
  Superantigen MAM [ 101343]
  Influenza virus matrix protein M1 [ 48144]
  DNA-glycosylase [ 48149]
  An anticodon-binding domain of class I aminoacyl-tRNA synthetases [ 48162]
  Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) [ 101352]
  R1 subunit of ribonucleotide reductase, N-terminal domain [ 48167]
  BEACH domain [ 81836]
  Cryptochrome/photolyase FAD-binding domain [ 48172]
  6-phosphogluconate dehydrogenase C-terminal domain-like [ 48178]
  Uteroglobin-like [ 48200]
  alpha/alpha toroid [ 48207] (6)
  Citrate synthase [ 48255]
  Cytochrome P450 [ 48263]
  Flagellar transcriptional activator FlhD [ 63591]
  HP0242-like [ 158751]
  SMc04008-like [ 158756]
  Ribosomal protein L7/12, oligomerisation (N-terminal) domain [ 48299]
  Class II MHC-associated invariant chain ectoplasmic trimerization domain [ 48304]
  Aldehyde ferredoxin oxidoreductase, C-terminal domains [ 48309]
  Acid phosphatase/Vanadium-dependent haloperoxidase [ 48316]
  BRCA2 helical domain [ 81871]
  BRCA2 tower domain [ 81877]
  H-NS histone-like proteins [ 81274]
  Sigma2 domain of RNA polymerase sigma factors [ 88945]
  DNA repair protein MutS, domain III [ 48333]
  Helical scaffold and wing domains of SecA [ 81885]
  all-alpha NTP pyrophosphatases [ 101385]
  Hsp90 co-chaperone CDC37 [ 101390]
  Nop domain [ 89123]
  YidB-like [ 140803]
  Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain [ 48339]
  A virus capsid protein alpha-helical domain [ 48344]
  P40 nucleoprotein [ 101398]
  Rhabdovirus nucleoprotein-like [ 140808]
  GTPase activation domain, GAP [ 48349]
  Ras GEF [ 48365]
  Telomeric repeat binding factor (TRF) dimerisation domain [ 63599]
  Poly A polymerase C-terminal region-like [ 81890]
  alpha-alpha superhelix [ 48370] (24)
  GUN4-like [ 140868]
  Lipoxigenase [ 48483]
  gene 59 helicase assembly protein [ 48492]
  Tetracyclin repressor-like, C-terminal domain [ 48497]
  Skp1 dimerisation domain-like [ 81384]
  F-box domain [ 81385]
  Nuclear receptor ligand-binding domain [ 48507]
  Phospholipase C/P1 nuclease [ 48536]
  ATP-dependent DNA ligase DNA-binding domain [ 117017]
  DNA primase DnaG, C-terminal domain [ 117022]
  PriB N-terminal domain-like [ 140913]
  VPS9 domain [ 109992]
  Triger factor/SurA peptide-binding domain-like [ 109997]
  DNA terminal protein [ 140918]
  Glycolipid transfer protein, GLTP [ 110003]
  Hypothetical protein MG354 [ 110008]
  Duffy binding domain-like [ 140923]
  Fic-like [ 140930]
  Her-1 [ 110013]
  ERO1-like [ 110018]
  Serum albumin-like [ 48551]
  L-aspartase-like [ 48556]
  Formin homology 2 domain (FH2 domain) [ 101446]
  Terpenoid synthases [ 48575]
  GroEL equatorial domain-like [ 48591]
  TorD-like [ 89154]
  Chorismate mutase II [ 48599]
  Peridinin-chlorophyll protein [ 48607]
  Heme oxygenase-like [ 48612]
  Indolic compounds 2,3-dioxygenase-like [ 140958]
  AhpD-like [ 69117]
  Double Clp-N motif [ 81922]
  Orange carotenoid protein, N-terminal domain [ 81929]
  DhaL-like [ 101472]
  ADP-ribosylglycohydrolase [ 101477]
  Topoisomerase V catalytic domain-like [ 140978]
  PTPA-like [ 140983]
  Tex N-terminal region-like [ 158831]
  AGR C 984p-like [ 158836]
  PMT central region-like [ 158841]
  FtsH protease domain-like [ 140989]
  Gametocyte protein Pfg27 [ 89161]
  N-terminal domain of bifunctional PutA protein [ 81934]
  Cysteine alpha-hairpin motif [ 47071]
  Phospholipase A2, PLA2 [ 48618]
  Fungal elicitin [ 48646]
  Tetraspanin [ 48651]
  GDNF receptor-like [ 110034]
  FinO-like [ 48656]
  Nuclear receptor coactivator interlocking domain [ 69124]
  Hermes dimerisation domain [ 140995]
  Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain [ 101488]
  Non-globular all-alpha subunits of globular proteins [ 48661] (14)
  Multiheme cytochromes [ 48694]