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Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47322]
Superfamily:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47323]
Family:   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases [ 47324] (6)


Family statistics
Genomes (3,030) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 6,863 53,223 14
Proteins 6,863 53,219 14


Enzyme Commission (EC)

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show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds1Moderately InformativeInherited
Enzyme Commission (EC)Valine--tRNA ligase0Highly InformativeDirect
Enzyme Commission (EC)Methionine--tRNA ligase0Highly InformativeDirect
Enzyme Commission (EC)Acid--ammonia (or amide) ligases (amide synthases)0.9667Highly InformativeInherited

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the musculature0.0115Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the digestive system0.01288Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0.4811Least InformativeInherited
Phenotypic Abnormality (PA)Neurodevelopmental delay0.0007929Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of digestive system physiology0.001015Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormal homeostasis0.1263Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the abdominal organs0.7568Moderately InformativeInherited
Phenotypic Abnormality (PA)Acidosis0.0002599InformativeDirect
Phenotypic Abnormality (PA)Abnormal liver morphology0.166InformativeInherited
Phenotypic Abnormality (PA)Decreased liver function0.0002528Highly InformativeDirect
Phenotypic Abnormality (PA)Hepatic steatosis0.0008564Highly InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.00006127Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.0005805Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.00312Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.06724Least InformativeInherited
Worm Phenotype (WP)organism stress response variant0.000002817Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0.0008629Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0.001192Moderately InformativeInherited
Worm Phenotype (WP)early embryonic lethal0.01498Moderately InformativeInherited
Worm Phenotype (WP)reproductive system morphology variant0.06482Moderately InformativeInherited
Worm Phenotype (WP)cell cycle variant0.1401Moderately InformativeInherited
Worm Phenotype (WP)protein expression variant0.156Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.3667Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.7911Moderately InformativeInherited
Worm Phenotype (WP)germ cell development variant1Moderately InformativeInherited
Worm Phenotype (WP)transgene expression increased0.00002743InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.0002637InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.0002637InformativeDirect
Worm Phenotype (WP)hermaphrodite physiology variant0.000483InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.0008591InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.0009067InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.001067InformativeInherited
Worm Phenotype (WP)endocytic transport defect0.001334InformativeInherited
Worm Phenotype (WP)level of protein expression variant0.001411InformativeInherited
Worm Phenotype (WP)oocyte morphology variant0.003817InformativeInherited
Worm Phenotype (WP)cell differentiation variant0.0000000007219Highly InformativeDirect
Worm Phenotype (WP)hypoxia response variant0.00000002962Highly InformativeDirect
Worm Phenotype (WP)pleiotropic defects severe early emb0.00001247Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.0002587Highly InformativeDirect
Worm Phenotype (WP)protein expression reduced0.0005635Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details)
YP termFDR (all)SDYP levelAnnotation (direct or inherited)
Yeast Phenotype (YP)resistance to chemicals0Least InformativeDirect

Document: YP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0Least InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)nervous system0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)0 seed germination stage0.000006253InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Forming carbon-oxygen bonds0InformativeDirect
Enzyme Commission (EC)Forming carbon-nitrogen bonds1InformativeInherited
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds0Highly InformativeDirect
Enzyme Commission (EC)Acid--ammonia (or amine) ligases (amide synthases)0.9868Highly InformativeInherited

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 17 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]