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Ribosomal protein L19 (L19e) superfamily

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   Ribosomal protein L19 (L19e) [ 48139]
Superfamily:   Ribosomal protein L19 (L19e) [ 48140]
Families:   Ribosomal protein L19 (L19e) [ 48141]


Superfamily statistics
Genomes (651) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 1,087 2,921 3
Proteins 1,079 2,902 3


Functional annotation
General category Information
Detailed category Translation

Document:
Function annotation of SCOP domain superfamilies

Gene Ontology (high-quality)

(show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Molecular Function (MF)structural molecule activity0.00000000071170.00000000000002568Moderately InformativeDirect
Cellular Component (CC)non-membrane-bounded organelle0.0000010660.00000002928Least InformativeDirect
Cellular Component (CC)cytoplasmic part0.0010390.000003044Least InformativeInherited
Cellular Component (CC)intracellular organelle part0.000042870.002412Least InformativeInherited
Cellular Component (CC)ribosome0.00000000080770.00000000000005927Moderately InformativeDirect
Cellular Component (CC)cytosolic part0.000015920.00000000001812Moderately InformativeDirect
Cellular Component (CC)large ribosomal subunit0.000000000020660InformativeDirect

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Molecular Function (MF) structural molecule activity 0.00000000000002568 Moderately Informative Direct
Cellular Component (CC) non-membrane-bounded organelle 0.00000002928 Least Informative Direct
Cellular Component (CC) cytoplasmic part 0.000003044 Least Informative Direct
Cellular Component (CC) intracellular organelle part 0.002412 Least Informative Inherited
Cellular Component (CC) ribosome 0.00000000000005927 Moderately Informative Direct
Cellular Component (CC) cytosolic part 0.00000000001812 Moderately Informative Direct
Cellular Component (CC) large ribosomal subunit 0 Informative Direct
Cellular Component (CC) cytosolic ribosome 0.0006348 Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein0Moderately InformativeDirect
Post-translational modificationRNA-binding0.0000003628Moderately InformativeDirect
Post-translational modificationRibosomal protein0InformativeDirect
Post-translational modificationrRNA-binding0.00000000005413InformativeDirect

Document: KW annotation of SCOP domains

InterPro annotation
Cross references IPR000196 SSF48140 Protein matches
Abstract

This entry represents the ribosomal protein L19 from eukaryotes, as well as L19e from archaea [PubMed10381320]. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species [PubMed15184028]. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.


InterPro database


PDBeMotif information about ligands, sequence and structure motifs
Cross references PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Browse and view proteins in genomes which have different domain combinations including a Ribosomal protein L19 (L19e) domain.


Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Ribosomal protein L19 (L19e) superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.


Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]