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Group II chaperonin (CCT, TRIC), ATPase domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   GroEL equatorial domain-like [ 48591]
Superfamily:   GroEL equatorial domain-like [ 48592] (2)
Family:   Group II chaperonin (CCT, TRIC), ATPase domain [ 48596]


Family statistics
Genomes (191) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 385 2,333 5
Proteins 385 2,333 5


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell development variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0001449Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.0002172Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0.0002614Least InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0Moderately InformativeDirect
Worm Phenotype (WP)cell cycle variant0.000000004692Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.00000008248Moderately InformativeDirect
Worm Phenotype (WP)cell death variant0.0008052Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.007103Moderately InformativeInherited
Worm Phenotype (WP)organism stress response variant0.04798Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.1832Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.2406Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.4659Moderately InformativeInherited
Worm Phenotype (WP)protein protein interaction variant0.9893Moderately InformativeInherited
Worm Phenotype (WP)transgene expression increased0InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000000000001125InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00000000001439InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.0000000003913InformativeDirect
Worm Phenotype (WP)hermaphrodite physiology variant0.0000000954InformativeDirect
Worm Phenotype (WP)vesicle organization variant0.0000001231InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.0000003199InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.0000004325InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.0000004504InformativeDirect
Worm Phenotype (WP)vulva morphology variant0.0000009238InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000002248InformativeDirect
Worm Phenotype (WP)accumulated germline cell corpses0.000005517InformativeDirect
Worm Phenotype (WP)protein metabolism variant0.0001177InformativeDirect
Worm Phenotype (WP)sick0.0001801InformativeDirect
Worm Phenotype (WP)gonad development variant0.0006808InformativeDirect
Worm Phenotype (WP)cell stress response variant0.001208InformativeInherited
Worm Phenotype (WP)cell component localization variant0.001333InformativeInherited
Worm Phenotype (WP)life span variant0.002492InformativeInherited
Worm Phenotype (WP)organism temperature response variant0.002944InformativeInherited
Worm Phenotype (WP)rachis morphology variant0.09307InformativeInherited
Worm Phenotype (WP)mitosis variant0.1112InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.287InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.6993InformativeInherited
Worm Phenotype (WP)oocytes small0.000000000000001565Highly InformativeDirect
Worm Phenotype (WP)pleiotropic defects severe early emb0.00000000000115Highly InformativeDirect
Worm Phenotype (WP)germline nuclear positioning variant0.00000000007684Highly InformativeDirect
Worm Phenotype (WP)rachis narrow0.0000000001819Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.000000006706Highly InformativeDirect
Worm Phenotype (WP)unfolded protein response variant0.00000002117Highly InformativeDirect
Worm Phenotype (WP)germ cell compartment anucleate0.00000003512Highly InformativeDirect
Worm Phenotype (WP)organism heat response variant0.00000007634Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.0000002261Highly InformativeDirect
Worm Phenotype (WP)extended life span0.000005184Highly InformativeDirect
Worm Phenotype (WP)male somatic gonad development variant0.00001555Highly InformativeDirect
Worm Phenotype (WP)gonad arm morphology variant0.00002806Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.00003381Highly InformativeDirect
Worm Phenotype (WP)no induction of antimicrobial peptide expression after infection0.00007301Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.000113Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0002525Highly InformativeDirect
Worm Phenotype (WP)diakinesis progression during oogenesis variant0.1559Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)visible0Moderately InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)adult0Least InformativeDirect
Fly Anatomy (FA)multi-tissue structure0.06016Least InformativeInherited
Fly Anatomy (FA)adult head0Moderately InformativeDirect
Fly Anatomy (FA)circulatory system0.000009252Moderately InformativeDirect
Fly Anatomy (FA)adult heart0.00000000002076InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)cell0.1125Least InformativeInherited
Zebrafish Anatomy (ZA)electrically active cell0.002363Moderately InformativeInherited
Zebrafish Anatomy (ZA)portion of tissue0.07756Moderately InformativeInherited
Zebrafish Anatomy (ZA)skeletal muscle0.0000003453InformativeDirect
Zebrafish Anatomy (ZA)muscle cell0.000004078InformativeDirect
Zebrafish Anatomy (ZA)digestive system0.01988InformativeInherited
Zebrafish Anatomy (ZA)myotome0.00000003843Highly InformativeDirect
Zebrafish Anatomy (ZA)solid compound organ0.0003302Highly InformativeDirect
Zebrafish Anatomy (ZA)liver and biliary system0.0005888Highly InformativeDirect
Zebrafish Anatomy (ZA)gut0.0007765Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0.207Least InformativeInherited
Xenopus ANatomical entity (XAN)tail region0.0008639Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0.002712Moderately InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.00005946InformativeDirect
Xenopus ANatomical entity (XAN)endocrine system0.0001598InformativeDirect
Xenopus ANatomical entity (XAN)tail0.0004972InformativeDirect
Xenopus ANatomical entity (XAN)thymus0.00008806Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)shoot apex0Least InformativeDirect
Plant ANatomical entity (PAN)shoot internode0Least InformativeDirect
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)plant embryo0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)vascular leaf0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)sepal0Least InformativeDirect
Plant ANatomical entity (PAN)petal0Least InformativeDirect
Plant ANatomical entity (PAN)stem0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)androecium0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)leaf lamina0Least InformativeDirect
Plant ANatomical entity (PAN)collective leaf structure0Least InformativeDirect
Plant ANatomical entity (PAN)stalk0Least InformativeDirect
Plant ANatomical entity (PAN)branch0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)phyllome apex0Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)seed development stage0.00001768InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a GroEL equatorial domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]