SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Group II chaperonin (CCT, TRIC), ATPase domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   GroEL equatorial domain-like [ 48591]
Superfamily:   GroEL equatorial domain-like [ 48592] (2)
Family:   Group II chaperonin (CCT, TRIC), ATPase domain [ 48596]


Family statistics
Genomes (191) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 385 2,333 5
Proteins 385 2,333 5


Worm Phenotype (WP)

(
show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)organism metabolism processing variant0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell development variant0Least InformativeDirect
Worm Phenotype (WP)cell morphology variant0Least InformativeDirect
Worm Phenotype (WP)cell physiology variant0.0001677Least InformativeDirect
Worm Phenotype (WP)blast cell physiology variant0.0001677Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.0003464Least InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0Moderately InformativeDirect
Worm Phenotype (WP)germ cell differentiation variant0Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)level of transgene expression variant0Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0Moderately InformativeDirect
Worm Phenotype (WP)protein protein interaction variant0.0000000646Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.0000001473Moderately InformativeDirect
Worm Phenotype (WP)cell death variant0.0007069Moderately InformativeDirect
Worm Phenotype (WP)body region morphology variant0.001072Moderately InformativeInherited
Worm Phenotype (WP)organism segment morphology variant0.001072Moderately InformativeInherited
Worm Phenotype (WP)developmental morphology variant0.001077Moderately InformativeInherited
Worm Phenotype (WP)adult body morphology variant0.001083Moderately InformativeInherited
Worm Phenotype (WP)body morphology variant0.001163Moderately InformativeInherited
Worm Phenotype (WP)organ system development variant0.006636Moderately InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0.2012Moderately InformativeInherited
Worm Phenotype (WP)cell type morphology variant0.2123Moderately InformativeInherited
Worm Phenotype (WP)chemical response variant0.3916Moderately InformativeInherited
Worm Phenotype (WP)transgene expression increased0InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000000000001136InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.00000000001452InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.0000000003868InformativeDirect
Worm Phenotype (WP)vesicle morphology variant0.00000008933InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.0000003572InformativeDirect
Worm Phenotype (WP)vulva morphology variant0.0000008539InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.000001369InformativeDirect
Worm Phenotype (WP)nuclear positioning variant0.000002088InformativeDirect
Worm Phenotype (WP)extended life span0.000003382InformativeDirect
Worm Phenotype (WP)accumulated germline cell corpses0.000005333InformativeDirect
Worm Phenotype (WP)cell stress response variant0.00003078InformativeDirect
Worm Phenotype (WP)oocyte physiology variant0.00003561InformativeDirect
Worm Phenotype (WP)protein metabolism variant0.00007745InformativeDirect
Worm Phenotype (WP)sick0.0001782InformativeDirect
Worm Phenotype (WP)gonad development variant0.0006632InformativeDirect
Worm Phenotype (WP)cell component localization variant0.001356InformativeInherited
Worm Phenotype (WP)organism stress response variant0.0125InformativeInherited
Worm Phenotype (WP)mitosis variant0.08813InformativeInherited
Worm Phenotype (WP)rachis morphology variant0.09401InformativeInherited
Worm Phenotype (WP)organism pathogen response variant0.1513InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.5358InformativeInherited
Worm Phenotype (WP)oocytes small0.00000000000000157Highly InformativeDirect
Worm Phenotype (WP)pleiotropic defects severe early emb0.0000000000009863Highly InformativeDirect
Worm Phenotype (WP)germline nuclear positioning variant0.00000000008092Highly InformativeDirect
Worm Phenotype (WP)rachis narrow0.0000000001834Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.000000006222Highly InformativeDirect
Worm Phenotype (WP)unfolded protein response variant0.00000001861Highly InformativeDirect
Worm Phenotype (WP)germ cell compartment anucleate0.00000003754Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.0000001819Highly InformativeDirect
Worm Phenotype (WP)male somatic gonad development variant0.00001568Highly InformativeDirect
Worm Phenotype (WP)gonad arm morphology variant0.00002828Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.00003498Highly InformativeDirect
Worm Phenotype (WP)no induction of antimicrobial peptide expression after infection0.00007047Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.0001138Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0002701Highly InformativeDirect
Worm Phenotype (WP)organism heat response variant0.0003208Highly InformativeDirect
Worm Phenotype (WP)diakinesis progression during oogenesis variant0.1621Highly InformativeInherited

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Fly Phenotype (FP)

(show details)
FP termFDR (all)SDFP levelAnnotation (direct or inherited)
Fly Phenotype (FP)visible0Moderately InformativeDirect

Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)tagma0Least InformativeDirect
Fly Anatomy (FA)adult0Least InformativeDirect
Fly Anatomy (FA)multi-tissue structure0.06753Least InformativeInherited
Fly Anatomy (FA)adult head0Moderately InformativeDirect
Fly Anatomy (FA)adult heart0.00000000002391InformativeDirect

Document: FA annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)cell0.1099Least InformativeInherited
Zebrafish Anatomy (ZA)electrically active cell0.002155Moderately InformativeInherited
Zebrafish Anatomy (ZA)portion of tissue0.07656Moderately InformativeInherited
Zebrafish Anatomy (ZA)skeletal muscle0.0000003525InformativeDirect
Zebrafish Anatomy (ZA)muscle cell0.000003881InformativeDirect
Zebrafish Anatomy (ZA)digestive system0.01897InformativeInherited
Zebrafish Anatomy (ZA)myotome0.00000003468Highly InformativeDirect
Zebrafish Anatomy (ZA)solid compound organ0.000301Highly InformativeDirect
Zebrafish Anatomy (ZA)liver and biliary system0.0005388Highly InformativeDirect
Zebrafish Anatomy (ZA)gut0.000738Highly InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)tissue0.2073Least InformativeInherited
Xenopus ANatomical entity (XAN)tail region0.0008511Moderately InformativeDirect
Xenopus ANatomical entity (XAN)musculoskeletal system0.00276Moderately InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.00006026InformativeDirect
Xenopus ANatomical entity (XAN)endocrine system0.0001591InformativeDirect
Xenopus ANatomical entity (XAN)tail0.0004921InformativeDirect
Xenopus ANatomical entity (XAN)thymus0.00008745Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)shoot apex0Least InformativeDirect
Plant ANatomical entity (PAN)shoot internode0Least InformativeDirect
Plant ANatomical entity (PAN)root0Least InformativeDirect
Plant ANatomical entity (PAN)plant embryo0Least InformativeDirect
Plant ANatomical entity (PAN)seed0Least InformativeDirect
Plant ANatomical entity (PAN)portion of meristem tissue0Least InformativeDirect
Plant ANatomical entity (PAN)vascular leaf0Least InformativeDirect
Plant ANatomical entity (PAN)megasporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)sepal0Least InformativeDirect
Plant ANatomical entity (PAN)petal0Least InformativeDirect
Plant ANatomical entity (PAN)stem0Least InformativeDirect
Plant ANatomical entity (PAN)inflorescence0Least InformativeDirect
Plant ANatomical entity (PAN)androecium0Least InformativeDirect
Plant ANatomical entity (PAN)gynoecium0Least InformativeDirect
Plant ANatomical entity (PAN)leaf lamina0Least InformativeDirect
Plant ANatomical entity (PAN)collective leaf structure0Least InformativeDirect
Plant ANatomical entity (PAN)stalk0Least InformativeDirect
Plant ANatomical entity (PAN)branch0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)phyllome apex0Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0Least InformativeDirect
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)seed development stage0.00001768InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 7 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a GroEL equatorial domain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Internal database links ]