SUPERFAMILY 1.75 HMM library and genome assignments server

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eIF5a N-terminal domain-like family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   SH3-like barrel [ 50036] (21)
Superfamily:   Translation proteins SH3-like domain [ 50104] (7)
Family:   eIF5a N-terminal domain-like [ 50110] (3)


Family statistics
Genomes (146) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 159 454 8
Proteins 159 454 8


Gene Ontology (high-coverage)

(
show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) biosynthetic process 0.00003269 Least Informative Direct
Biological Process (BP) cellular nitrogen compound metabolic process 0.02452 Least Informative Inherited
Biological Process (BP) organonitrogen compound metabolic process 0.002292 Least Informative Inherited
Biological Process (BP) primary metabolic process 0.03833 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.003066 Least Informative Inherited
Biological Process (BP) biological regulation 0.3637 Least Informative Inherited
Biological Process (BP) gene expression 0.00000003743 Moderately Informative Direct
Biological Process (BP) cellular amide metabolic process 0.0000002995 Moderately Informative Direct
Biological Process (BP) cellular protein metabolic process 0.00001698 Moderately Informative Direct
Biological Process (BP) cellular nitrogen compound biosynthetic process 0.00004316 Moderately Informative Direct
Biological Process (BP) cellular macromolecule biosynthetic process 0.00033 Moderately Informative Direct
Biological Process (BP) regulation of macromolecule metabolic process 0.6104 Moderately Informative Inherited
Biological Process (BP) regulation of cellular metabolic process 0.1683 Moderately Informative Inherited
Biological Process (BP) regulation of nitrogen compound metabolic process 0.8365 Moderately Informative Inherited
Biological Process (BP) regulation of biosynthetic process 0.3221 Moderately Informative Inherited
Biological Process (BP) regulation of primary metabolic process 0.9277 Moderately Informative Inherited
Biological Process (BP) regulation of cellular amide metabolic process 0.000001181 Informative Direct
Biological Process (BP) translation 0.000001537 Informative Direct
Biological Process (BP) posttranscriptional regulation of gene expression 0.000007921 Informative Direct
Biological Process (BP) regulation of translation 0.0000006555 Highly Informative Direct
Molecular Function (MF) binding 0.5102 Least Informative Inherited
Molecular Function (MF) heterocyclic compound binding 0.005988 Moderately Informative Inherited
Molecular Function (MF) organic cyclic compound binding 0.006818 Moderately Informative Inherited
Molecular Function (MF) RNA binding 0.000001537 Informative Direct
Molecular Function (MF) translation factor activity, RNA binding 0.0000000000001012 Highly Informative Direct

Document: GO annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport1Least InformativeInherited
Biological processProtein transport0.6924Moderately InformativeInherited
Biological processProtein biosynthesis0InformativeDirect
Biological processmRNA transport0.00002854Highly InformativeDirect
Biological processTranslocation0.01677Highly InformativeInherited
Cellular componentCytoplasm0Least InformativeDirect
Post-translational modificationInitiation factor0Highly InformativeDirect
Post-translational modificationElongation factor0Highly InformativeDirect
Post-translational modificationHydroxylation0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 23 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Translation proteins SH3-like domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-coverage) · UniProtKB KeyWords (KW) · Internal database links ]