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Sm motif of small nuclear ribonucleoproteins, SNRNP family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   Sm-like fold [ 50181] (5)
Superfamily:   Sm-like ribonucleoproteins [ 50182] (6)
Family:   Sm motif of small nuclear ribonucleoproteins, SNRNP [ 50183] (8)


Family statistics
Genomes (498) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 1,407 3,326 18
Proteins 1,405 3,323 18


Disease Ontology (DO)

(
show details) Document: DO annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell development variant0.00002286Least InformativeDirect
Worm Phenotype (WP)organism behavior variant0.0002648Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.02343Least InformativeInherited
Worm Phenotype (WP)organism environmental stimulus response variant0.0271Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.03144Least InformativeInherited
Worm Phenotype (WP)germ cell development variant0.0000003771Moderately InformativeDirect
Worm Phenotype (WP)cell type morphology variant0.0000007276Moderately InformativeDirect
Worm Phenotype (WP)organ system development variant0.000004401Moderately InformativeDirect
Worm Phenotype (WP)pattern of transgene expression variant0.0001401Moderately InformativeDirect
Worm Phenotype (WP)cell cycle variant0.0002339Moderately InformativeDirect
Worm Phenotype (WP)protein protein interaction variant0.0004828Moderately InformativeDirect
Worm Phenotype (WP)early embryonic lethal0.0009652Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.001627Moderately InformativeInherited
Worm Phenotype (WP)cell division variant0.002657Moderately InformativeInherited
Worm Phenotype (WP)protein expression variant0.005435Moderately InformativeInherited
Worm Phenotype (WP)cell death variant0.01106Moderately InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.4208Moderately InformativeInherited
Worm Phenotype (WP)cell organization biogenesis variant0.8081Moderately InformativeInherited
Worm Phenotype (WP)cell number increased0.000000000006013InformativeDirect
Worm Phenotype (WP)sick0.00000001951InformativeDirect
Worm Phenotype (WP)pachytene progression during oogenesis variant0.00000005613InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.0000004847InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.0000005356InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.0000009657InformativeDirect
Worm Phenotype (WP)pattern protein expression variant0.000001104InformativeDirect
Worm Phenotype (WP)life span variant0.00001356InformativeDirect
Worm Phenotype (WP)hermaphrodite physiology variant0.00001414InformativeDirect
Worm Phenotype (WP)germ cell physiology variant0.00004419InformativeDirect
Worm Phenotype (WP)endocytic transport defect0.00006089InformativeDirect
Worm Phenotype (WP)vesicle organization variant0.0001205InformativeDirect
Worm Phenotype (WP)cell fate specification variant0.0002031InformativeDirect
Worm Phenotype (WP)brood size variant0.001061InformativeInherited
Worm Phenotype (WP)vulva development variant0.001206InformativeInherited
Worm Phenotype (WP)cell component localization variant0.03552InformativeInherited
Worm Phenotype (WP)mitosis variant0.06247InformativeInherited
Worm Phenotype (WP)meiotic chromosome organization variant0.5311InformativeInherited
Worm Phenotype (WP)cell proliferation increased0.000000000000007503Highly InformativeDirect
Worm Phenotype (WP)intestinal development variant0.000000000009955Highly InformativeDirect
Worm Phenotype (WP)embryonic arrest0.0000000001799Highly InformativeDirect
Worm Phenotype (WP)multivulva0.000000000249Highly InformativeDirect
Worm Phenotype (WP)RAB-11 recycling endosome localization variant0.00001188Highly InformativeDirect
Worm Phenotype (WP)no oocytes0.00005637Highly InformativeDirect
Worm Phenotype (WP)organism pigmentation variant0.0001939Highly InformativeDirect
Worm Phenotype (WP)cell secretion variant0.000251Highly InformativeDirect
Worm Phenotype (WP)chromosome condensation variant0.0002971Highly InformativeDirect
Worm Phenotype (WP)cell membrane organization biogenesis variant0.0008665Highly InformativeDirect

Document: WP annotation of SCOP domains

Fly Phenotype (FP)

(show details) Document: FP annotation of SCOP domains

Fly Anatomy (FA)

(show details)
FA termFDR (all)SDFA levelAnnotation (direct or inherited)
Fly Anatomy (FA)larva0Least InformativeDirect

Document: FA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)germ cell0.00003214Moderately InformativeDirect
Xenopus ANatomical entity (XAN)anatomical entity in vitro0.00003203InformativeDirect
Xenopus DEvelopment stage (XDE)unfertilized egg stage0.0009096Highly InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect

Document: AP annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Post-translational modificationRibonucleoprotein2.434e-16InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 60 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Sm-like ribonucleoproteins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Worm Phenotype (WP) · Fly Phenotype (FP) · Fly Anatomy (FA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · UniProtKB KeyWords (KW) · Internal database links ]