SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Anticodon-binding domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   OB-fold [ 50198] (16)
Superfamily:   Nucleic acid-binding proteins [ 50249] (16)
Family:   Anticodon-binding domain [ 50250] (2)


Family statistics
Genomes (1,452) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 2,394 16,515 10
Proteins 2,394 16,515 10


Enzyme Commission (EC)

(
show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Ligases0Least InformativeDirect
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compoun0Moderately InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0.000000000004217InformativeDirect

Document: EC annotation of SCOP domains

Human Phenotype (HP)

(show details)
HP termFDR (all)SDHP levelAnnotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the musculature0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect
Phenotypic Abnormality (PA)Neurodevelopmental delay0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of movement0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal reflex0InformativeDirect

Document: HP annotation of SCOP domains

Worm Phenotype (WP)

(show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect
Worm Phenotype (WP)cell development variant0.00718Least InformativeInherited
Worm Phenotype (WP)cell physiology variant0.01484Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.01807Least InformativeInherited
Worm Phenotype (WP)organism environmental stimulus response variant0.01977Least InformativeInherited
Worm Phenotype (WP)organism metabolism processing variant0.08473Least InformativeInherited
Worm Phenotype (WP)germ cell differentiation variant0.00009214Moderately InformativeDirect
Worm Phenotype (WP)cell cycle variant0.0000975Moderately InformativeDirect
Worm Phenotype (WP)cell organization biogenesis variant0.000151Moderately InformativeDirect
Worm Phenotype (WP)cell division variant0.000394Moderately InformativeDirect
Worm Phenotype (WP)germ cell development variant0.0004882Moderately InformativeDirect
Worm Phenotype (WP)reproductive system morphology variant0.0007974Moderately InformativeDirect
Worm Phenotype (WP)cell type morphology variant0.002022Moderately InformativeInherited
Worm Phenotype (WP)level of transgene expression variant0.002061Moderately InformativeInherited
Worm Phenotype (WP)pachytene progression during oogenesis variant0.000001623InformativeDirect
Worm Phenotype (WP)diplotene progression during oogenesis variant0.000001623InformativeDirect
Worm Phenotype (WP)germ cell compartment expansion variant0.000005692InformativeDirect
Worm Phenotype (WP)rachis morphology variant0.000006035InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.000008527InformativeDirect
Worm Phenotype (WP)oocyte morphology variant0.00002885InformativeDirect
Worm Phenotype (WP)transgene expression increased0.0002585InformativeDirect
Worm Phenotype (WP)cell differentiation variant0.00000001027Highly InformativeDirect
Worm Phenotype (WP)diplotene region organization variant0.000000287Highly InformativeDirect
Worm Phenotype (WP)oocyte number decreased0.000001591Highly InformativeDirect

Document: WP annotation of SCOP domains

Yeast Phenotype (YP)

(show details) Document: YP annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)tail region0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)tail0InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

Document: XA annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)microsporophyll0Least InformativeDirect
Plant ANatomical entity (PAN)sporangium0Least InformativeDirect
Plant ANatomical entity (PAN)microgametophyte0Least InformativeDirect

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEC levelAnnotation (direct or inherited)
Enzyme Commission (EC)Transferases1Least InformativeInherited
Enzyme Commission (EC)Ligases0Moderately InformativeDirect
Enzyme Commission (EC)Acyltransferases1Moderately InformativeInherited
Enzyme Commission (EC)Forming carbon-oxygen bonds0InformativeDirect
Enzyme Commission (EC)Aminoacyltransferases0.008094InformativeInherited
Enzyme Commission (EC)Ligases forming aminoacyl-tRNA and related compounds0Highly InformativeDirect

Document: EC annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 186 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Nucleic acid-binding proteins domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Enzyme Commission (EC) · Human Phenotype (HP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]