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Amylase, catalytic domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   TIM beta/alpha-barrel [ 51350] (33)
Superfamily:   (Trans)glycosidases [ 51445] (14)
Family:   Amylase, catalytic domain [ 51446] (25)


Family statistics
Genomes (2,560) Uniprot 2017_06 genome PDB chains (SCOP 1.75)
Domains 18,902 104,108 162
Proteins 18,717 102,904 162


Gene Ontology (high-quality)

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show details)
GO termFDR (singleton)FDR (all)SDFO levelAnnotation (direct or inherited)
Biological Process (BP)response to stimulus0.0081961Least InformativeInherited
Biological Process (BP)response to chemical0.00038261Moderately InformativeInherited
Biological Process (BP)cellular response to stimulus0.00053181Moderately InformativeInherited

Document: GO annotation of SCOP domains

Gene Ontology (high-coverage)

(show details)
GO term FDR (all) SDFO level Annotation (direct or inherited)
Biological Process (BP) single-organism metabolic process 0 Least Informative Direct
Biological Process (BP) primary metabolic process 0.0000008053 Least Informative Direct
Biological Process (BP) biological regulation 1 Least Informative Inherited
Biological Process (BP) response to stimulus 1 Least Informative Inherited
Biological Process (BP) single-organism cellular process 0.3652 Least Informative Inherited
Biological Process (BP) biosynthetic process 1 Least Informative Inherited
Biological Process (BP) macromolecule metabolic process 0.8087 Least Informative Inherited
Biological Process (BP) carbohydrate metabolic process 0 Moderately Informative Direct
Biological Process (BP) organic substance catabolic process 0.000000000000001589 Moderately Informative Direct
Biological Process (BP) cellular catabolic process 0.0000000000002115 Moderately Informative Direct
Biological Process (BP) single-organism catabolic process 0.000000007463 Moderately Informative Direct
Biological Process (BP) carbohydrate derivative metabolic process 0.8205 Moderately Informative Inherited
Biological Process (BP) response to chemical 1 Moderately Informative Inherited
Biological Process (BP) cellular response to stimulus 1 Moderately Informative Inherited
Biological Process (BP) transport 1 Moderately Informative Inherited
Biological Process (BP) lipid metabolic process 1 Moderately Informative Inherited
Biological Process (BP) cellular component biogenesis 1 Moderately Informative Inherited
Biological Process (BP) cellular macromolecule biosynthetic process 0.04838 Moderately Informative Inherited
Biological Process (BP) single-organism localization 0.8026 Moderately Informative Inherited
Biological Process (BP) cellular carbohydrate metabolic process 0 Informative Direct
Biological Process (BP) energy derivation by oxidation of organic compounds 0 Informative Direct
Biological Process (BP) carbohydrate catabolic process 0 Informative Direct
Biological Process (BP) polysaccharide metabolic process 0 Informative Direct
Biological Process (BP) carbohydrate biosynthetic process 0.0000000000008587 Informative Direct
Biological Process (BP) macromolecule catabolic process 0.0000008554 Informative Direct
Biological Process (BP) anion transport 0.0005401 Informative Direct
Biological Process (BP) cation transport 0.4661 Informative Inherited
Biological Process (BP) regulation of anatomical structure morphogenesis 0.06599 Informative Inherited
Biological Process (BP) lipid catabolic process 0.3491 Informative Inherited
Biological Process (BP) carbohydrate derivative catabolic process 0.06114 Informative Inherited
Biological Process (BP) energy reserve metabolic process 0 Highly Informative Direct
Biological Process (BP) oligosaccharide metabolic process 0 Highly Informative Direct
Biological Process (BP) polysaccharide catabolic process 0.00000000307 Highly Informative Direct
Biological Process (BP) single-organism carbohydrate catabolic process 0.000000005893 Highly Informative Direct
Biological Process (BP) amino acid transport 0.00000001496 Highly Informative Direct
Biological Process (BP) cellular glucan metabolic process 0.0000000944 Highly Informative Direct
Biological Process (BP) glycolipid metabolic process 0.0000001474 Highly Informative Direct
Biological Process (BP) cell wall organization or biogenesis 0.000002308 Highly Informative Direct
Biological Process (BP) cellular lipid catabolic process 0.145 Highly Informative Inherited
Molecular Function (MF) hydrolase activity 0.0000000000002017 Least Informative Direct
Molecular Function (MF) binding 1 Least Informative Inherited
Molecular Function (MF) transferase activity 0.9901 Least Informative Inherited
Molecular Function (MF) transporter activity 0.5864 Moderately Informative Inherited
Molecular Function (MF) metal ion binding 0.0413 Moderately Informative Inherited
Molecular Function (MF) transferase activity, transferring glycosyl groups 0 Informative Direct
Molecular Function (MF) hydrolase activity, acting on glycosyl bonds 0 Informative Direct
Molecular Function (MF) amino acid transmembrane transporter activity 0.00000001449 Highly Informative Direct
Molecular Function (MF) carbohydrate binding 0.0000004301 Highly Informative Direct
Molecular Function (MF) calcium ion binding 0.0000004706 Highly Informative Direct
Cellular Component (CC) intracellular organelle part 1 Least Informative Inherited
Cellular Component (CC) membrane 1 Least Informative Inherited
Cellular Component (CC) cytoplasmic part 0.5412 Least Informative Inherited
Cellular Component (CC) intracellular membrane-bounded organelle 1 Least Informative Inherited
Cellular Component (CC) cell periphery 0.5031 Moderately Informative Inherited
Cellular Component (CC) plastid 0.000002683 Informative Direct
Cellular Component (CC) external encapsulating structure 0.000005419 Informative Direct
Cellular Component (CC) plasma membrane part 0.6211 Informative Inherited
Cellular Component (CC) cell wall 0.000001814 Highly Informative Direct
Cellular Component (CC) external side of plasma membrane 0.0001233 Highly Informative Direct
Cellular Component (CC) intrinsic component of plasma membrane 0.1287 Highly Informative Inherited

Document: GO annotation of SCOP domains

Enzyme Commission (EC)

(show details)
EC termFDR (all)SDEO levelAnnotation (direct or inherited)
Enzyme Commission (EC)Glycosyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Glycosidases, i.e. enzymes hydrolyzing O- and S-gl0Moderately InformativeDirect
Enzyme Commission (EC)Hexosyltransferases0InformativeDirect
Enzyme Commission (EC)Cyclomaltodextrin glucanotransferase0.00000001037Highly InformativeDirect
Enzyme Commission (EC)Alpha-glucosidase0.0001026Highly InformativeDirect

Document: EC annotation of SCOP domains

UniProtKB KeyWords (KW)

(show details)
KW termFDR (all)SDKW levelAnnotation (direct or inherited)
Biological processTransport1Least InformativeInherited
Biological processCarbohydrate metabolism0Moderately InformativeDirect
Cellular componentSecreted0Moderately InformativeDirect
Cellular componentPlastid0.401Moderately InformativeInherited
Cellular componentLysosome0.0005InformativeDirect
DiseaseDental caries0Highly InformativeDirect
DiseaseGlycogen storage disease0.000000000003627Highly InformativeDirect
DomainSignal0Least InformativeDirect
Molecular functionCalcium0Moderately InformativeDirect
Molecular functionChloride0Highly InformativeDirect
Post-translational modificationTransferase0Least InformativeDirect
Post-translational modificationHydrolase0Least InformativeDirect
Post-translational modificationGlycosyltransferase0InformativeDirect
Post-translational modificationGlycosidase0InformativeDirect
Post-translational modificationDisulfide bond0Least InformativeDirect
Post-translational modificationGlycoprotein0.0000000005498Least InformativeDirect
Post-translational modificationPyrrolidone carboxylic acid0InformativeDirect

Document: KW annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 161 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a (Trans)glycosidases domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Gene Ontology (high-quality) · Gene Ontology (high-coverage) · Enzyme Commission (EC) · UniProtKB KeyWords (KW) · Internal database links ]